Clone FMO12375 Report

Search the DGRC for FMO12375

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:123
Well:75
Vector:pMK33-CFH-BD
Associated Gene/TranscriptPino-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12375.5prime Sequence

635 bp (635 high quality bases) assembled on 2012-10-09

> FMO12375.5prime
AGTCGACATGAAAACGGGCAGCAACAACAACCACATCTCCGCCAGCAGCA
GCAGCAGCAACAACAACAACAACAGCTCATTGGTGCAACAGCAGCAGCAA
CGCTCCACCACTTCCGTTTCCGTCTCCTCGTCTCACATTGTCACCGAGTG
GGAGGATGGCATCATTTTCGATGTGGACGATCCCGACTTTTGCAATCTGG
CCACCGACAAGCTGAACTTCATAGTGCCATCAGCAGCCAATATGTCGATC
GCCAGTGTTCACGGTCCCCAAATCGCCGACATCTGCAGTCCCCTGTCGCA
TCACAATCTCGGTCTGTCTGCCTCGCTGCCAGATCTGGTGGGCAGTCCCC
TGGAGATCAGCATGGACAACGTGCTGACCATTGAGGAGCTGCGCCAGCAC
ATGGGCTCCTGCTTCACCTGCGGCGTCTCCTGGACGGACGACCATGTGTC
CCTCGACTGCAGCGAATGCGGTGGCTACAGCCTGGAGCGTCCCTGTCCCC
TGTGCGACGGCCAGTGCGGTGTCCAATGGAAACGTGATTTCGCCATGTCC
CATGCCTGCAGTCAAGCTCGCTGGGTGGGCGTGTGCATCAGCTACCCGGA
AGTCGTGGCCGGAGTCCAGTTTGCCCGTGGGAGCA

FMO12375.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
Pino-RB 1980 CG4710-RB 151..777 8..635 3115 99.8 Plus
Pino-RC 2130 CG4710-RC 518..927 225..635 2030 99.8 Plus
Pino-RA 2079 CG4710-RA 467..876 225..635 2030 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1116441..1116690 547..298 1250 100 Minus
2L 23513712 2L 1128129..1128345 224..8 1085 100 Minus
2L 23513712 2L 1115857..1115944 635..547 395 98.9 Minus
2L 23513712 2L 1117443..1117518 298..223 380 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:10:55 has no hits.

FMO12375.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:59 Download gff for FMO12375.5prime
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 145..776 1..634 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:00 Download gff for FMO12375.5prime
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 145..776 1..634 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:39 Download gff for FMO12375.5prime
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 145..776 1..634 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:39 Download gff for FMO12375.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1117444..1117516 225..297 100 <- Minus
2L 1128129..1128351 1..224 98   Minus
2L 1115858..1115943 548..634 98 <- Minus
2L 1116441..1116690 298..547 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:00 Download gff for FMO12375.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1116441..1116690 298..547 100 <- Minus
arm_2L 1115858..1115943 548..634 98 <- Minus
arm_2L 1117444..1117516 225..297 100 <- Minus
arm_2L 1128129..1128351 1..224 98   Minus