FMO12377.5prime Sequence
759 bp (759 high quality bases) assembled on 2012-10-09
> FMO12377.5prime
GTCGACATGGCGGACGTGAGCGATCCCAGCGAACTGTTCGACCTGGAGCT
GCACGACCTGGAACTGCAGGACGACAAGGCCAGGGACTCCGACGACGACA
GGATCGAGCTGGACGATGTTGACCTAGAACCGGAATTGTGTATTAATCTG
CACCAAGACACTGAGGGCCAGGAGACCATACAGCTCTGCGAGGAGAATGT
TAATCCAGGTAAAATCAAGCTGGGACCCAAGGACTTTGAGCTCAAGAAGG
TCCTTGGCAAAGGTGGTTATGGCAAAGTATTTCAGGTGCGCAAGACCGCT
GGACGAGATGCTAACAAATATTTTGCCATGAAGGTGCTCAAAAAGGCATC
CATTGTGACCAATCAAAAGGACACAGCGCACACCCGCGCCGAGCGCAATA
TACTCGAGGCAGTCAAGCATCCCTTCATAGTGGAGCTAGTTTATGCCTTC
CAGACAGACGGAAAACTATACCTTATACTTGAATATCTCAGCGGTGGAGA
GCTGTTCATGCATTTGGAGCGTGAGGGCATCTTCTTAGAGGATACCACAT
GCTTCTATTTAAGCGAAATCATTTTGGCCTTGGGCCATCTACACAAACTG
GGCATCATCTACCGCGATCTGAAGCCCGAGAACATACTGCTCGATGCACA
GGGACACGTGAAGCTCACGGACTTCGGACTGTGCAAGGAGCACATACAAG
AGGGTATTGTCACCCACACCTTCTGCGGCACAATTGAATACATGGCACCT
GAAATTTTG
FMO12377.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:10:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S6k-RB | 4885 | CG10539-RB | 532..1284 | 7..759 | 3750 | 99.9 | Plus |
| S6k-RA | 3486 | CG10539-RA | 532..1284 | 7..759 | 3750 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:10:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5806492..5806685 | 744..551 | 955 | 99.5 | Minus |
| 3L | 28110227 | 3L | 5806945..5807084 | 417..278 | 700 | 100 | Minus |
| 3L | 28110227 | 3L | 5806747..5806882 | 551..416 | 680 | 100 | Minus |
| 3L | 28110227 | 3L | 5807132..5807260 | 287..159 | 645 | 100 | Minus |
| 3L | 28110227 | 3L | 5810288..5810400 | 119..7 | 565 | 100 | Minus |
| 3L | 28110227 | 3L | 5807948..5807988 | 158..118 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:10:58 has no hits.
FMO12377.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:34:00 Download gff for
FMO12377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S6k-RA | 555..1310 | 1..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:01 Download gff for
FMO12377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S6k-RA | 529..1284 | 1..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:42 Download gff for
FMO12377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S6k-RA | 529..1284 | 1..759 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:42 Download gff for
FMO12377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5806390..5806405 | 744..759 | 100 | <- | Minus |
| 3L | 5806493..5806684 | 552..743 | 99 | <- | Minus |
| 3L | 5806747..5806880 | 418..551 | 100 | <- | Minus |
| 3L | 5806945..5807076 | 286..417 | 100 | <- | Minus |
| 3L | 5807134..5807260 | 159..285 | 100 | <- | Minus |
| 3L | 5807948..5807988 | 118..158 | 100 | <- | Minus |
| 3L | 5810290..5810403 | 1..117 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:01 Download gff for
FMO12377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5799490..5799505 | 744..759 | 100 | <- | Minus |
| arm_3L | 5799593..5799784 | 552..743 | 99 | <- | Minus |
| arm_3L | 5799847..5799980 | 418..551 | 100 | <- | Minus |
| arm_3L | 5800045..5800176 | 286..417 | 100 | <- | Minus |
| arm_3L | 5800234..5800360 | 159..285 | 100 | <- | Minus |
| arm_3L | 5801048..5801088 | 118..158 | 100 | <- | Minus |
| arm_3L | 5803390..5803503 | 1..117 | 97 | | Minus |
