FMO12378.5prime Sequence
992 bp (855 high quality bases) assembled on 2012-10-09
> FMO12378.5prime
GTCGACATGAAGGAGTTCTGCCGCACCTGCGGCAAGACCGTCGTGGCCGA
TGAATGCCTTCAGATCTTCACGCCTGCGGGCCGAAAGTTGCTGCAGTGCG
TCCGTTCCATCACAAATTGCTGGCTGCAGAATGTCCAGGATTTGCCCAAT
CACATATGTACGGACTGCCAGGTGCTGCTCAGCCAGGTGCAAAAGTTCCG
GCGGCGTTGTGCCAAGATCGAGAAGTACTTCGCCAGGCGGCGGAGGAGAA
TGAATCTCGGCGAGGCTCCAGCGGCCATGGAGCAACTTCGCGTCCAGCAG
GCAGCTGCTCCGGATCCGCTGGGCATTGACGAGCTGATGTCGGCCAGTGA
CATCAAAATAGAACCCATCCAGTTGCAAATGGAAGAGGACCCACAAGCGC
CGTATCCCGAAAATCAGCTTGAACAAGCTCTTAGCTATGGCAATGCACCG
GGTGATGACATCCTACCCCTTCCCGAGGACTATGGAGAGGCACAGACTGA
AGTGGCGACCACTACCAACGAGCCAGCACAGCGAAGAAGCAAGAACACGG
CCAAAATAAAGTCCAAGAAGCACACAATGCGCGTGGGCCGAAAGCTGATC
CATGTAAAAGTCATCGATGATAAGCAGCCAAAGCGTATTGTGGACCGCAA
TGGACCCAGCGCCAAGCCCTGCATCTGCGAGCACTGCGGCCGGCAATTCA
AAGACACCAGCATCTCCATGTCCATCTGCTGCGGCACACGGGCACCAAGC
CGTTCGAGTGCGACCAGTGCCACCAGAAGTGCTACACGCTCCACCTGCTG
CGGCGCACCAGCTGAAGCAAACGGAGGGTCCCTAACGCCTGCACCTTCTG
CGGCTGAGTAAAGCACGAACAGCTCGCGCGTGAGACATGGAATGGAAGCC
TGACAGAAAGGACGAGCGGCGCCATCCAAGTGGGAGATTCATCAGAACGG
CGGGGCGCACCTTCACTTCGCGGGGTGTGGCGGACTCTCTGG
FMO12378.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:11:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4820-RB | 1187 | CG4820-RB | 79..1038 | 7..964 | 4405 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11216792..11217561 | 123..889 | 3580 | 98.8 | Plus |
| 3R | 32079331 | 3R | 11216613..11216729 | 7..123 | 585 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frogger | 2483 | frogger FROGGER 2483bp | 1205..1251 | 581..534 | 111 | 72.9 | Minus |
FMO12378.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:34:01 Download gff for
FMO12378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4820-RB | 1..958 | 5..960 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:04 Download gff for
FMO12378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4820-RB | 74..1034 | 1..960 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:44 Download gff for
FMO12378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4820-RB | 74..1034 | 1..960 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:44 Download gff for
FMO12378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11216608..11216729 | 1..123 | 96 | -> | Plus |
| 3R | 11216793..11217569 | 124..897 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:04 Download gff for
FMO12378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7042515..7043291 | 124..897 | 98 | -> | Plus |
| arm_3R | 7042330..7042451 | 1..123 | 96 | -> | Plus |
