FMO12380.5prime Sequence
801 bp (800 high quality bases) assembled on 2012-10-09
> FMO12380.5prime
GTCGACATGATAGAACGGGAAATTATCCACACAACACCTGCCTCGAAGCG
CATCTTCGACGTCCTCAAGGATGTCCTGCAATTTTTCGAGCTCTATGTGC
GAATTCTGTTGGAGCTGTTTGTGTCGCTGGTGCAGATTGTGCTGCCCAAA
AAGCAGAAGGATGTCAGCGGGGAGATAGTTTTGATAACCGGAACTGGGCA
TGGAATTGGTCGGGAGTTGGCCCTACACTATGCTTCATTGGGTAGCACAG
TGGTTTGTGTGGATATCGATGGCAAAAATAATCTGCAGACGGTGGAGAAG
GCCAAACGGCTCAATCTCGGCGAGGTTTACAGCTACAGCTGCGATGTTTC
CAAGCGCGATGAGGTTACGGCACTGGCGGATCGGATCAAGTCGGATGTTG
GATGCATATCGGTGCTGGTTAATAATGTGGGCATAATGCCAACGCATCCC
ATTCTGCAGCAATCGGCCGAGGAAATCCAGCGGGTCTTCGACGTGAACGT
GTTCTCGCAGTTCTGGACCATCCAGGCCTTCTTGCCGCACATGCAGGAGA
AGTGTCGTGGCCACATCATTTGCATGTCCTCCATTGCCGGCTTTGGTGGG
CATCTCCAACCTGGTGCCCTATTGTGCCACCAAATTCGCTGTACGCGGGT
CTGATGGAGGCACTGCATGCCGAATTACCGACAGGACTTTTCAGGGATCT
GATTCGAACCACCACCATCTTTCCCCTATATGACCAACACTTGGCTTCTG
CAAGCATCCCAAGGTGAATTCCCATCGATTCCTGGGGCCTGCTCCATCCC
C
FMO12380.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:11:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14946-RE | 1249 | CG14946-RE | 208..997 | 6..800 | 3715 | 98.5 | Plus |
| CG14946-RC | 2524 | CG14946-RC | 1483..2272 | 6..800 | 3715 | 98.5 | Plus |
| CG14946-RD | 1386 | CG14946-RD | 279..1068 | 6..800 | 3715 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:11:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12063929..12064292 | 701..336 | 1640 | 97.8 | Minus |
| 2L | 23513712 | 2L | 12064350..12064505 | 338..183 | 780 | 100 | Minus |
| 2L | 23513712 | 2L | 12064562..12064719 | 187..30 | 775 | 99.4 | Minus |
| 2L | 23513712 | 2L | 12063794..12063871 | 779..701 | 235 | 95 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:11:06 has no hits.
FMO12380.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:34:02 Download gff for
FMO12380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14946-RC | 1475..2269 | 1..801 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:08 Download gff for
FMO12380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14946-RD | 274..1068 | 1..801 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:48 Download gff for
FMO12380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14946-RD | 274..1068 | 1..801 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:48 Download gff for
FMO12380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12063774..12063870 | 702..801 | 92 | <- | Minus |
| 2L | 12063929..12064289 | 339..701 | 98 | <- | Minus |
| 2L | 12064350..12064504 | 184..338 | 100 | <- | Minus |
| 2L | 12064566..12064719 | 30..183 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:08 Download gff for
FMO12380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12064566..12064719 | 30..183 | 100 | <- | Minus |
| arm_2L | 12064350..12064504 | 184..338 | 100 | <- | Minus |
| arm_2L | 12063774..12063870 | 702..801 | 92 | <- | Minus |
| arm_2L | 12063929..12064289 | 339..701 | 98 | <- | Minus |
