FMO12385.5prime Sequence
676 bp (603 high quality bases) assembled on 2012-10-09
> FMO12385.5prime
AGTCGACATGGAAACAGTTCGCACCGGTTCGCTCGAGTGTGCAGTAGATG
ATCCAGCGGCAGGAATGGCGGCCACGATCCAGAACACCCTGAAGGTGGCG
CTGCGAAAGCGCATGAAGGATGCACTGAAGGGCATCGACGCGGAGGCCAT
CGCCCGGCAGTCGCAGGCCGTCACGGCTAAGGTGCTGCAAAGCGAGATCT
TCCGGCAGGCGCAGCGGGTGAGCATTTACCTGAGCACAGCCTCGGAGCTG
GACACCACGGCGCTGCTGTCGGAGATGTTCCGCCTGGAGAAGATGGTCTT
TGTGCCCACCTACGAGGGCAGCAGGATGAAGATGGTGCGGCTGCGCGGCA
TGGAGGAGTACGAGAGCCTGCCTCTGACCAAGTGGAACATAAAGCAGCCG
GACTTCAAGGAGGCTCGCGAGGATGCCATGACCAACGGGCACGGCATCGA
TCTCTTCATTGTGCCCGGTGTGGCCTTCACCCGCTGCGGAGCTCGGATGG
GCCATGGCATGGGCTACTACGACAAGTTCCTCAAGCAGCACGCGGAGAAG
TATCCGCAAAGAAGATCTCGCTGATGGCACTGTCGCTCAACGAGCAGATA
GTCAGCCAACGAGGAGTTGACCATGGAGTCGCACGACGTCCGTTTGCACA
GTGTAATTACGGAAAACGCAAGCTTT
FMO12385.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:11:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34424-RA | 915 | CG34424-RA | 209..868 | 8..667 | 3225 | 99.4 | Plus |
| CG34424-RB | 699 | CG34424-RB | 1..652 | 16..667 | 3185 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:11:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23359668..23359926 | 180..438 | 1280 | 99.6 | Plus |
| 2R | 25286936 | 2R | 23359989..23360219 | 437..667 | 1045 | 98.7 | Plus |
| 2R | 25286936 | 2R | 23359423..23359598 | 8..183 | 880 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:11:09 has no hits.
FMO12385.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:34:03 Download gff for
FMO12385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34424-RA | 199..871 | 1..676 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:09 Download gff for
FMO12385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34424-RA | 203..875 | 1..676 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:48 Download gff for
FMO12385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34424-RA | 203..875 | 1..676 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:48 Download gff for
FMO12385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23359417..23359596 | 1..181 | 98 | -> | Plus |
| 2R | 23359670..23359925 | 182..437 | 99 | -> | Plus |
| 2R | 23359990..23360226 | 438..676 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:09 Download gff for
FMO12385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19246940..19247119 | 1..181 | 98 | -> | Plus |
| arm_2R | 19247193..19247448 | 182..437 | 99 | -> | Plus |
| arm_2R | 19247513..19247749 | 438..676 | 97 | | Plus |
