FMO12386.5prime Sequence
830 bp (747 high quality bases) assembled on 2012-10-09
> FMO12386.5prime
GTCGACATGGCCGAACTGGACGATTTCTTCGCGAAAAAGGACAAGAAGAA
GTCCAAGAACAAGACTAAGTTCGTGACCGCCGACGAGATGGTGAAGAACC
TGGAGGACGGCACCAAGCGCGAGGTGGTCAAGCCCAAAAAACCTGAGGTA
GCCGCTGGCGGCGTGGCAGTAGTAGGCGAAAACGAGAATAGCGGCACCAA
GGTGCCAGAGTCCGCCCCGCCCGTCGAGGAGGAATGGAAGGAGTTCGAGG
AGGAGCAGCGCAAGGACTACAGTGGCTTAAAGATCGGCCAGCTGAGCACC
ATCTCTTCGGCCCGTTCCAGAACTGCCCAGGAAAGTTCCGAGTCGCAAGC
TGCTCGAGTGCCCTCTGCCCCGGACGGCGGCAACTACAATGAGGACGATG
AGGACAGCAATGGGTATGACAACGCGGACGTAAACAAGGAGCGCGTCGGC
CACGGACCCTGGAAGAAAGTTGTCCCAGCCGAGGAGGTAATGCAGATTCC
GGTGCCCGTGGAGGTGGAAAAGCACTCGTCCAAGACCTACGTTTCACCCG
CGCTACGATACAGCCAGCAGGCCGGAAGTGGACTGGGAGGCGGCCCTACT
GGGGGGGGCATTGCGTCCACGACGCGCCGCCCCCGACATCACCAATACCG
AGTTTTTCCCAACCCTTAATTGCGGCGCGTCCGGAGGAACAGCGCATGAA
GAAAAACGAACCCGCCTTCGAAAAGTCCGTCACGGAACCGTTTCAGCGTG
TTCAGAGTCACTGCTGCCCGGTGGCGGCCTCCACCGATTCTGTGCTTGAC
ACTAATAAGCGCAACCTTCTATACATTTCG
FMO12386.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:11:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3760-RA | 1060 | CG3760-RA | 89..878 | 6..790 | 3690 | 98.5 | Plus |
| CG3760-RC | 1240 | CG3760-RC | 201..972 | 6..790 | 3410 | 96.2 | Plus |
| CG3760-RB | 1128 | CG3760-RB | 89..860 | 6..790 | 3410 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:11:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24938956..24939217 | 303..564 | 1310 | 100 | Plus |
| 2R | 25286936 | 2R | 24938460..24938673 | 6..219 | 1070 | 100 | Plus |
| 2R | 25286936 | 2R | 24939271..24939442 | 565..737 | 690 | 97.1 | Plus |
| 2R | 25286936 | 2R | 24938759..24938842 | 219..302 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:11:12 has no hits.
FMO12386.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:34:04 Download gff for
FMO12386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3760-RA | 120..923 | 1..800 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:12 Download gff for
FMO12386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3760-RA | 87..890 | 1..800 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:50 Download gff for
FMO12386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3760-RA | 87..890 | 1..800 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:50 Download gff for
FMO12386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24938956..24939217 | 303..564 | 100 | -> | Plus |
| 2R | 24939271..24939513 | 565..800 | 93 | | Plus |
| 2R | 24938458..24938673 | 1..219 | 98 | -> | Plus |
| 2R | 24938760..24938842 | 220..302 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:12 Download gff for
FMO12386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20825981..20826196 | 1..219 | 98 | -> | Plus |
| arm_2R | 20826283..20826365 | 220..302 | 100 | -> | Plus |
| arm_2R | 20826479..20826740 | 303..564 | 100 | -> | Plus |
| arm_2R | 20826794..20827036 | 565..800 | 93 | | Plus |
