FMO12390.5prime Sequence
756 bp (756 high quality bases) assembled on 2012-10-09
> FMO12390.5prime
GTCGACATGGACCACGCCCATCACAGTGCGCCCGGTGTTGATCACTCGAT
GCATCACGATCATGTGGGCATGCACCACGATCACAGCGGTATACCTGCTG
CGACAGCGTCTCCAATGGATGCAGCTTCCATGTTCGACCTGATCCCCGAT
ACCAGCGATTTGCAGGCAAGTCACGCGGGTCACGCCGCTCACGGAGCGCA
CAATCATGGCGGTGGCTCTGGCACGGGAATGGAGCACATGATGCCCATGG
CGTTCCATTTTGGCTACAACGAGACGATCCTGTTCTCCTGGTGGCACATC
GAAACAGTGGCCGGTTTGATCGGCTCCATGATCGCCATCTTCCTGCTGGC
CCTAATGTACGAGGGACTGAAGTACTACCGCGAGTATCTATTCTGGAAGA
CATACAATCTGCTGGAATATCGACCTGTGACGGGGCCACAAAGAAATCCG
GATGCACCGCGCATACCATCGCCGGCAGCGGCAGCTCCATCGCCCGTTCA
ACCTTCGATGCTGTCGATTAACCACCTGCTCCAGACACTGCTGCACGTGC
TCCAGGTGACGCTGTCCTTCCTGCTCATGCTGATCTTCATGACATATAAC
GTGTGGCTCTGCCTGATGGTTGTCCTGGGCGCCGCCGTTGGTTACTTCCT
CTTCTGCTGGAAGAAATCGGTTATCGTGGACGTAACCGAGCACTGTCACG
CAACCTTTTCTAGACCATTCGGTTGGGCGCGCGGGTCAGGTAAGTGGTCA
TATCCA
FMO12390.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:11:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ctr1A-RB | 1575 | CG3977-RB | 303..995 | 7..699 | 3435 | 99.7 | Plus |
| Ctr1A-RA | 2103 | CG3977-RA | 201..893 | 7..699 | 3435 | 99.7 | Plus |
| Ctr1A-RD | 1503 | CG3977-RD | 201..695 | 7..501 | 2460 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:11:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6665438..6665686 | 252..500 | 1230 | 99.6 | Plus |
| X | 23542271 | X | 6665161..6665373 | 40..252 | 1065 | 100 | Plus |
| X | 23542271 | X | 6666850..6667048 | 501..699 | 980 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:11:16 has no hits.
FMO12390.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:34:05 Download gff for
FMO12390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ctr1A-RA | 195..897 | 1..704 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:14 Download gff for
FMO12390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ctr1A-RA | 195..897 | 1..704 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:52 Download gff for
FMO12390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ctr1A-RA | 195..897 | 1..704 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:52 Download gff for
FMO12390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6665162..6665373 | 41..252 | 100 | -> | Plus |
| X | 6665439..6665686 | 253..500 | 99 | -> | Plus |
| X | 6666850..6667047 | 501..702 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:14 Download gff for
FMO12390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6559195..6559406 | 41..252 | 100 | -> | Plus |
| arm_X | 6559472..6559719 | 253..500 | 99 | -> | Plus |
| arm_X | 6560883..6561080 | 501..702 | 97 | -> | Plus |
