FMO12391.5prime Sequence
847 bp (843 high quality bases) assembled on 2012-10-09
> FMO12391.5prime
GTCGACATGGCCGAAGTGCGACGCAGGAAGGGCGAGGATGAGCCACTGGA
GGACACGGCCATCTCCGGATCTGACGCAGCCAATAAGCGCAACTCCGCCG
CCGACTCCTCGGACCATGTGGACTCCGAGGAAGAGAAGATTCCCGAGGAG
AAGTTCGTCGACGAACTGGCCAAGAATCTGCCGCAGGGAACCGACAAAAC
GCCCGAGATATTGGACTCGGCCCTCAAGGATCTGCCGGATAGATGGAAGA
ACTGGGTGATTCGCGGCATCTTCACATGGATTATGATCTGCGGCTTCGCA
TTGATCATCTATGGTGGACCGCTGGCCTTGATGATCACGACGTTACTGGT
GCAGGTGAAGTGCTTCCAGGAGATCATCTCGATTGGCTACCAGGTTTATC
GAATTCATGGCTTGCCCTGGTTCCGAAGCCTTTCCTGGTATTTCCTGCTT
ACCTCAAATTACTTCTTTTACGGAGAGAATCTGGTAGACTACTTTGGCGT
TGTAATTAATCGGGTGGAATATCTGAAGTTCCTGGTGACCTATCACCGGT
TCCTTTCCTTCGCCCTGTACATCATCGGGTTCGTTTGGTTCGTGCTCTCA
CTGGTGAAGAAGTATTACATCAAACAATTCAGCCTGTTTGCCTGGACCCA
TGTATCCCTGCTGATTGTCGTCACCCAGAGTTTACCTCATCATACAGAAT
ATATTTGAGGGGCTCATTTGGTTCATCGTACCTGTTTCGATGATAGTGTG
CATTGATGTCATGACGTACGTGTTCGGTTTCTTCTTTGGGCGCACTCCCC
TTCATCAAGCTCACCCCCATAAAAACTTGAGAGGCTTCCTTCGGGGT
FMO12391.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:11:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CdsA-RB | 2609 | CG7962-RB | 424..1234 | 7..819 | 3970 | 99.4 | Plus |
| CdsA-RA | 2391 | CG7962-RA | 206..1016 | 7..819 | 3970 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:11:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8129851..8130152 | 516..819 | 1375 | 98.4 | Plus |
| 3L | 28110227 | 3L | 8129613..8129791 | 339..517 | 895 | 100 | Plus |
| 3L | 28110227 | 3L | 8129080..8129208 | 114..242 | 630 | 99.2 | Plus |
| 3L | 28110227 | 3L | 8128259..8128371 | 7..119 | 565 | 100 | Plus |
| 3L | 28110227 | 3L | 8129450..8129548 | 241..339 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:11:19 has no hits.
FMO12391.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:34:06 Download gff for
FMO12391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CdsA-RA | 200..1022 | 1..824 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:16 Download gff for
FMO12391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CdsA-RA | 198..1020 | 1..824 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:54 Download gff for
FMO12391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CdsA-RA | 198..1020 | 1..824 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:54 Download gff for
FMO12391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8128251..8128369 | 1..117 | 96 | -> | Plus |
| 3L | 8129084..8129208 | 118..242 | 100 | -> | Plus |
| 3L | 8129452..8129548 | 243..339 | 100 | -> | Plus |
| 3L | 8129614..8129790 | 340..516 | 100 | -> | Plus |
| 3L | 8129852..8130156 | 517..824 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:16 Download gff for
FMO12391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8122714..8122890 | 340..516 | 100 | -> | Plus |
| arm_3L | 8121351..8121469 | 1..117 | 96 | -> | Plus |
| arm_3L | 8122184..8122308 | 118..242 | 100 | -> | Plus |
| arm_3L | 8122552..8122648 | 243..339 | 100 | -> | Plus |
| arm_3L | 8122952..8123256 | 517..824 | 97 | | Plus |
