FMO12401.5prime Sequence
883 bp (841 high quality bases) assembled on 2012-10-19
> FMO12401.5prime
GTCGACATGAATTCCGAGATTAATCAACGATTCCTGGCCCGCGGCTCGCA
GAAGGACAAAGGACTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCA
TGAATGCAGCCGTGCGAGCCTGTGTCCGTATGGCCATCTATTTGGGCTGC
AAGGTCTACTTCATTCGTGAAGGCTACCAGGGCATGGTGGATGGTGGCGA
CTGCATCCAGGAAGCCAACTGGGCCTCAGTCTCATCCATTATCCATCGTG
GTGGCACCATCATTGGCTCCGCCCGTTGCCAGGACTTCCGTGAGCGTCAG
GGTCGCTTGAAAGCCGCTAACAACCTGATTCAGCGAGGAATCACCAATCT
GGTGGTCATTGGAGGCGATGGCTCCCTCACGGGCGCCAATCTGTTCCGTC
AGGAGTGGTCCAGCCTGTTGGACGAGCTGGTCAAGAACAAGACCATTACT
TCCGAGCAGCAGGAGAAGTTCAATGTCCTGCACATCGTTGGATTGGTTGG
CTCCATCGACAACGATTTCTGTGGCACTGACATGACCATCGGCACGGACA
CGGCACTACATCGCATCATCTAGGCAATCGATGCCATCTCCAGTACAGTC
TACTCCCATCAGCGCACCTTCATCATGGAGGTCATGGGTCGTCATTGCGG
CTATTTAGCTCTTGTGGGTGGACTGGCGTGCGAGGCGGATTTCATATTTC
ATTCCCGAAATGCCGCCCAAGGTCGATTGGCCAGACAGGCTCTGCTCTCC
GCTGGCCCAGGAGCGATCTGCTGGCCATCGTCTGAACATCGTGATTGTGG
CCGATGGAGCCATGGATCGCTAGGGTCATCCCATCTCAGCCCGAGGATGT
AAAGAAGGTGATCGACACGTCTGAACACATGCC
FMO12401.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:15:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pfk-RB | 3508 | CG4001-RB | 560..1428 | 7..875 | 4105 | 98.4 | Plus |
| Pfk-RA | 3217 | CG4001-RA | 634..1457 | 52..875 | 3880 | 98.3 | Plus |
| Pfk-RC | 3188 | CG4001-RC | 560..1428 | 7..875 | 3460 | 93.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:15:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10112612..10112960 | 149..497 | 1715 | 99.4 | Plus |
| 2R | 25286936 | 2R | 10113015..10113170 | 495..650 | 750 | 98.7 | Plus |
| 2R | 25286936 | 2R | 10111429..10111577 | 7..155 | 730 | 99.3 | Plus |
| 2R | 25286936 | 2R | 10113537..10113652 | 645..761 | 505 | 97.4 | Plus |
| 2R | 25286936 | 2R | 10114914..10115021 | 758..866 | 435 | 95.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:15:03 has no hits.
FMO12401.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:05 Download gff for
FMO12401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfk-RB | 528..1411 | 1..883 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:53 Download gff for
FMO12401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfk-RB | 555..1438 | 1..883 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:13 Download gff for
FMO12401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfk-RB | 555..1438 | 1..883 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:13 Download gff for
FMO12401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10113543..10113651 | 651..760 | 98 | -> | Plus |
| 2R | 10114917..10115042 | 761..883 | 92 | | Plus |
| 2R | 10111424..10111575 | 1..153 | 96 | -> | Plus |
| 2R | 10112617..10112958 | 154..495 | 99 | -> | Plus |
| 2R | 10113016..10113170 | 496..650 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:53 Download gff for
FMO12401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5998929..5999080 | 1..153 | 96 | -> | Plus |
| arm_2R | 6000122..6000463 | 154..495 | 99 | -> | Plus |
| arm_2R | 6000521..6000675 | 496..650 | 98 | -> | Plus |
| arm_2R | 6001048..6001156 | 651..760 | 98 | -> | Plus |
| arm_2R | 6002422..6002547 | 761..883 | 92 | | Plus |
