FMO12402.5prime Sequence
1098 bp (808 high quality bases) assembled on 2012-10-19
> FMO12402.5prime
AGTCGACATGGCCTCCACCAGCAATCTGCTGGACGTGGTGCGCCACTACC
AGCGCAGCATTGAGAAGCACGGCGAGGACGAACAACGGCTGCTGCACTGC
ATCACCAAGCTGTTCAACCTGCCGATCAAATTCGAGCACCTGCAGGAAAC
GGGAATTGGCAAGACGGTGAATGCCCTGCGCAAGATCAGCGGGGAAGTTG
GCGTGGCGGCCAAGACGCTGGTAACCAAGTGGAAGGCAATGGTGGCGAAG
GAGGACCCTTCGATCGCATCTACGCCTACAGCCATACATAACGAAGAGGA
CTCGGGCAAGACCAAGTCCAGCGACGAGGATCCCGACCAGGAGAACAAGG
GCGGCAACTCATCCAGCGGCGAGGACTTGAACGTTACAAGCACAAGTCAA
AGCATGCCAAGAGCACCAAGCATGAGCGTAGCAGCAGCAGCCGATCTCAC
TCTAATTTTTTTGTCTGACTCGGATAAGAAGCACAAGAGCTCTCGCCACG
ATAAATCCAAGGATAGAGATAAAGATCGGGAGGGTCAGAAGGAAGCTAAG
GAGCACAAAGAAAAGAAGTCAAATGGCGAGCACAAGTCAAAGGATTCCAG
CAAATCCAGCAGCAGTCACAAGAGCAGCAAATCCGAGAGCCACAAGAGCG
AACACACCAAAAGCAAGCACGAAAAGGACAAAACTTCTCACAGTGAATTC
AAGGAAGTCAAAGACAAGTCGAGCAAACACAAATCATCGTCCTCCAAGTC
ATCAAAGCGCTCCCATAGTTCCCCACGCACGAGGAGGAGTCCAAAAAGCA
AAGATACAAAAGTAAATCGAAATCTGAGGAGATTCGCTGATGTTTGACTC
AGCATGGCGCAATTTTGACGATGTCTGGTCTGCTAACTACCATAATAGCA
GGAGAGCACAGTAACGCAGAGCAGTTTGTCGCAAGCAACTGCAGCCCTTC
CTCGTCGCTTATCAGCCTACGATGTTGGTCATCTAGAGGCCTCCACTAGC
GTCGACTGACCCAAACCGGACTGTGTCCAGCTAACTGAACCTTGATCAAA
TTGCTAGACTCCACATCAAATAGGCCAGGCTAATCAAAGTTGGAGGCC
FMO12402.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:15:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EloA-RA | 2869 | CG6755-RA | 315..1355 | 8..1011 | 4045 | 94.7 | Plus |
EloA-RB | 2697 | CG6755-RB | 224..1183 | 89..1011 | 3640 | 94.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:15:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23252248..23252837 | 88..677 | 2720 | 98.1 | Plus |
3R | 32079331 | 3R | 23252890..23253049 | 675..830 | 575 | 95 | Plus |
3R | 32079331 | 3R | 23251877..23251957 | 8..88 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:15:06 has no hits.
FMO12402.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:07 Download gff for
FMO12402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EloA-RA | 324..1327 | 1..972 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:54 Download gff for
FMO12402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EloA-RA | 305..1308 | 1..972 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:14 Download gff for
FMO12402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EloA-RA | 305..1308 | 1..972 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:14 Download gff for
FMO12402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23251867..23251957 | 1..88 | 95 | -> | Plus |
3R | 23252249..23252836 | 89..676 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:54 Download gff for
FMO12402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19077589..19077679 | 1..88 | 95 | -> | Plus |
arm_3R | 19077971..19078558 | 89..676 | 98 | -> | Plus |