FMO12403.5prime Sequence
1073 bp (936 high quality bases) assembled on 2012-10-19
> FMO12403.5prime
AGTCGACATGTCCAGGTCGCGTTCATCCGCTAAAGCCGTGCAGTTCAAGC
ACGAATCGGAGGAAGAGGAAGAAGACGAGGAGGAGCAGCTGCCTTCCAGG
AGAATGCACTCTTACGGAGACGCCGCGGCCATCGGAAGCGGGGTGCCGGC
CTTTTTGGCCAAATTGTGGCGCCTGGTGGACGATGCCGATACCAATCGCT
TGATTTGCTGGACCAAGGATGGCCAAAGTTTCGTTATACAAAATCAAGCG
CAATTCGCCAAGGAACTATTGCCACTAAACTACAAGCACAACAACATGGC
CAGCTTCATAAGGCAATTGAATATGTATGGATTCCACAAGATCACCTCTA
TTGACAATGGCGGACTACGTTTTGATCGCGACGAGATTGAATTTTCGCAC
CCATTTTTTAAGCGCAACTCGCCTTTTCTACTTGACCAAATCAAAAGGAA
AATATCGAACAACAAAAATGGTGACGACAAAGGTGTCCTGAAGCCGGAGG
CCATGTCGAAGATTCTCACCGATGTGAAAGTCATGCGGGGTCGTCAGGAC
AATCTGGATTCGCGCTTCTCCGCCATGAAACAGGAGAACGAAGTGCTGTG
GCGCGAGATAGCCAGCCTGCGCCAAAAGCACGCTAAGCAGCAACAAATAG
TCAACAAACTGATCCAGTTCCTCATTACCATTGTGCAACCGTCGCGCAAC
ATGTCTGGCGTGAAACGCCACGTGCAGCTGATGATCAACAATACGCCGGA
AATTGATCGTGCACGGACCACCAGTGAGACCGAGAGCGAGAGTGGCGGCG
GACCGGTTATCCACGAGCTTAGGGAGGAGCTTCTTGATGAGGTGATGAAT
CCATCACCGGCTGGCTACACCGCAGCCTCACATTATGACCAGAGAGCGTC
TCTCCCGCCTGCCGTTGAGCGGTCGCGATCTACATGACATTAGCTCGCAC
AACGTCGATTATTCGAATCAGAGTGTGGAGGACTGCTGCTCCAGGGAATT
TGAACCGCTTGCGGTATAATTCCTAGTAGCGGAAACCGCCTTCTCTCCAT
GGCCCTAAAGTGGTGGAGTCAAA
FMO12403.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:15:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsf-RA | 2771 | CG5748-RA | 244..1297 | 8..1062 | 4905 | 98.2 | Plus |
| Hsf-RD | 2897 | CG5748-RD | 244..1297 | 8..1062 | 4905 | 98.2 | Plus |
| Hsf-RC | 2838 | CG5748-RC | 257..1310 | 8..1062 | 4905 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:15:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18132249..18132941 | 1016..327 | 3145 | 98.6 | Minus |
| 2R | 25286936 | 2R | 18133870..18134080 | 218..8 | 1055 | 100 | Minus |
| 2R | 25286936 | 2R | 18133004..18133114 | 326..216 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:15:09 has no hits.
FMO12403.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:07 Download gff for
FMO12403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsf-RD | 241..1258 | 8..1022 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:56 Download gff for
FMO12403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsf-RC | 257..1274 | 8..1022 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:16 Download gff for
FMO12403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsf-RC | 257..1274 | 8..1022 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:16 Download gff for
FMO12403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18133871..18134080 | 8..217 | 100 | | Minus |
| 2R | 18132243..18132941 | 327..1022 | 98 | <- | Minus |
| 2R | 18133004..18133112 | 218..326 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:56 Download gff for
FMO12403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14019748..14020446 | 327..1022 | 98 | <- | Minus |
| arm_2R | 14020509..14020617 | 218..326 | 100 | <- | Minus |
| arm_2R | 14021376..14021585 | 8..217 | 100 | | Minus |
