Clone FMO12406 Report

Search the DGRC for FMO12406

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:124
Well:6
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13862-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12406.5prime Sequence

275 bp (-60 high quality bases) assembled on 2012-10-19

> FMO12406.5prime
CAACTTCAGGAACTCCAGGTGATCTCTCCCCCCAGTTAAGCTCCGGCTAA
AGCCACGTGTCTACCCAGGGCATCCCTCTCAGGCTTGCGGAAACGTGGAG
GCGACGGATCATGCCGCTGCCCTGACCACCTACCATGCCAACCGCCCCCA
GCCGCGTCGCATTTACAATCACCAGGAAGTCGAGGTGGACAGCTCGTTCT
TTGAGCCCACGCCGGATCGGATCGAGGAACTCAAGCGTATTCTCTTGGAT
CAGCAAGCAAGCTTTCTAGACCATT

FMO12406.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG13862-RA 490 CG13862-RA 171..425 1..256 1240 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22332240..22332494 1..256 1215 99.2 Plus
Blast to na_te.dros performed on 2014-11-28 18:15:14 has no hits.

FMO12406.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:09 Download gff for FMO12406.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13862-RA 171..428 1..259 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:00 Download gff for FMO12406.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13862-RA 171..428 1..259 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:19 Download gff for FMO12406.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13862-RA 171..429 1..260 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:19 Download gff for FMO12406.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22332240..22332498 1..260 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:00 Download gff for FMO12406.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18157962..18158220 1..260 98   Plus