Clone FMO12408 Report

Search the DGRC for FMO12408

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:124
Well:8
Vector:pMK33-CFH-BD
Associated Gene/TranscriptMst77F-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12408.5prime Sequence

671 bp (671 high quality bases) assembled on 2012-11-28

> FMO12408.5prime
AGTCGACATGAGTAATCTGAAACAAAAGGATAGCAAGCCGGAGGTGGCAG
TAACAAAATCAGTGAAAACCTATAAAAAATCAATTGAATATGTTAATTCC
GACGCCTCCGACATTGAAGAAGATATCAATAGGGCAGAGGACGAATACGC
CTCATCGTCTGGCTTTGTTAATTTTCTGAGGGACTTTAAGAAGCGCTACG
GAGAATATTACTCGAATAACGAGATAAGACGGGCTGCTGAAACCCGATGG
AACGAAATGTCATTCCGTCATCGATGCCAGTATTCTGCGGAACCATTGGA
CACTTTTCATGTAGAGCCCAACAGTGTGAGCAGTCTTCAGCGTTCTAGTG
AGGGCGAGCACAGAATGCACTCTGAAATAAGTGGCTGCGCAGACACTTTC
TTCGGTGCCGGTGGCTCCAATAGCTGCACTCCAAGAAAGGAGAACAAGTG
TTCCAAGCCCAGGGTGCGGAAGAGTTGCCCCAAACCACGGGCGAAAACCT
CGAAGCAACGTCGCAGTTGCGGCAAACCGAAGCCCAAGGGCGCCCGACCC
CGGAAGGCATGTCCCCGCCCCAGGAAGAAGATGGAATGCGGCAAGGCGTA
GGCAAAGCCAAGGTGTCTTAAGCCCAAGAGTTCCAAGCCCAAGTGCTCGA
TGGCAAGCTTTCTAGACCATT

FMO12408.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
Mst77F-RA 1065 CG3354-RA 150..794 8..652 3195 99.7 Plus
Mst77Y-9-RA 660 CG45769-RA 16..654 8..649 2450 92.2 Plus
CG45764-RA 942 CG45764-RA 147..785 8..649 2450 92.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20817172..20817535 652..289 1790 99.5 Minus
3L 28110227 3L 20817596..20817878 290..8 1415 100 Minus
Y 3667352 Y 3341184..3341540 289..649 1375 93.4 Plus
Y 3667352 Y 3289701..3290058 289..649 1350 92.2 Plus
Y 3667352 Y 3358926..3359280 291..649 1350 93 Plus
Y 3667352 Y 3285354..3285711 289..649 1335 92 Plus
Y 3667352 Y 3302187..3302544 289..649 1335 92 Plus
Y 3667352 Y 3336760..3337117 289..649 1335 92 Plus
Y 3667352 Y 3371242..3371596 291..649 1335 92.8 Plus
Ymm 880023 Ymm 515762..516116 649..291 1335 92.8 Minus
Y 3667352 Y 3293966..3294323 289..649 1320 91.7 Plus
Y 3667352 Y 3350011..3350368 289..649 1320 91.7 Plus
Y 3667352 Y 3354465..3354822 289..649 1320 91.7 Plus
Y 3667352 Y 3297764..3298120 289..649 1315 92.2 Plus
Y 3667352 Y 3327916..3328273 289..649 1305 91.4 Plus
Y 3667352 Y 3332337..3332693 289..649 1300 92 Plus
Y 3667352 Y 3319090..3319436 289..649 1135 88.9 Plus
Y 3667352 Y 3323503..3323849 289..649 1135 88.9 Plus
Y 3667352 Y 3336415..3336697 8..290 1100 92.6 Plus
Y 3667352 Y 3289355..3289637 8..290 1085 92.2 Plus
Y 3667352 Y 3293621..3293903 8..290 1085 92.2 Plus
Y 3667352 Y 3301842..3302124 8..290 1085 92.2 Plus
Y 3667352 Y 3327571..3327853 8..290 1085 92.2 Plus
Y 3667352 Y 3318745..3319027 8..290 1085 92.2 Plus
Y 3667352 Y 3323158..3323440 8..290 1085 92.2 Plus
Y 3667352 Y 3349666..3349948 8..290 1085 92.2 Plus
Y 3667352 Y 3354120..3354402 8..290 1085 92.2 Plus
Y 3667352 Y 3358586..3358868 8..290 1085 92.2 Plus
Y 3667352 Y 3370902..3371184 8..290 1085 92.2 Plus
Y 3667352 Y 3297419..3297701 8..290 1055 91.5 Plus
Y 3667352 Y 3340839..3341121 8..290 1055 91.5 Plus
Y 3667352 Y 3345262..3345544 8..290 1055 91.5 Plus
Y 3667352 Y 3376297..3376579 8..290 1025 90.8 Plus
Y 3667352 Y 3285012..3285291 8..290 1005 91.2 Plus
Y 3667352 Y 3331995..3332274 8..290 1005 91.2 Plus
Y 3667352 Y 3345663..3345944 365..649 1000 90.9 Plus
Y 3667352 Y 3364784..3365040 393..649 985 92.2 Plus
Y 3667352 Y 3376698..3376978 365..649 935 90.2 Plus
Y 3667352 Y 3364536..3364742 8..217 715 90.5 Plus
Blast to na_te.dros performed on 2014-11-28 18:36:46 has no hits.

FMO12408.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-28 09:27:06 Download gff for FMO12408.5prime
Subject Subject Range Query Range Percent Splice Strand
Mst77F-RA 167..820 1..656 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:11 Download gff for FMO12408.5prime
Subject Subject Range Query Range Percent Splice Strand
Mst77F-RA 144..797 1..656 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:02 Download gff for FMO12408.5prime
Subject Subject Range Query Range Percent Splice Strand
Mst77F-RA 144..797 1..656 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:02 Download gff for FMO12408.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20817169..20817534 290..656 98 <- Minus
3L 20817597..20817883 1..289 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:11 Download gff for FMO12408.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20810269..20810634 290..656 98 <- Minus
arm_3L 20810697..20810983 1..289 98   Minus