FMO12409.5prime Sequence
810 bp (810 high quality bases) assembled on 2012-11-28
> FMO12409.5prime
TCGACATGCGGCAAGGATCTGTTGTTATCTACCTAGGTTTGTTGGCTTTC
ATTGCAATTGTCGATTGCCAGGAAAACAATAATCTCGTGTCCATAGTAAC
CGACCACTCTATACAATGCCCACCATTTGACGATCCCAACCATAATGTGA
TGTTGCCATATCCCAATGACTGTAGCAAGTATTACGTATGCCAAAAAGGA
CGAGCCTATGAGCAACAGTGTCCTCTGAATTTGTTCTGGAGCCAGATGAC
CTACCGCTGTGACTACAAGGAGTACTCCAACTGCAATACGTATATTCCAA
GTCCCAACCATGATGTTGAGGTCATATTTAGTGCATATCCCGGAGATTGC
AGGCGATTCTACGAGACACGTATCCTTCGCTGTGAGCAAAACCTCCAGTG
GAGTTCAGTATACCAGAGATGCGTTGTCCCACAGTATGGCGATTGTCTTT
TTCTCTCCTGTGACCGTGCCACCCGTAGTCCCCTTTACCCCACTGCCTAC
CTATCCACCCGTTCCAACCGTTCCCGCAACCGTGATACCTTATGATCCCA
TGCCCACCGCTGGTACTCCACCGCCTATAACTCCCATGGAATCTTTACCT
CTGCCAATTGACGTCCAATCATTGTGCAATAACAGTCCTCCCAATGCGTA
CATTCCTTATCCGGGCAGTTGTAAGAAGTTTATACATTGCGGACCAACAG
CAACCATTCTTTCATGCGCAGCTCCTCGAATTGGAATCCTGCCCAGCATG
CCTGCACCACTTACAGCAATGGGTGCCAGGCTTCTTTAAATGCAAGCTTT
CTAGACCATT
FMO12409.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11570-RB | 936 | CG11570-RB | 42..827 | 6..791 | 3825 | 99.2 | Plus |
| CG11570-RA | 909 | CG11570-RA | 16..800 | 7..791 | 3820 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11956817..11957519 | 791..89 | 3360 | 99.1 | Minus |
| 3L | 28110227 | 3L | 11957580..11957662 | 89..7 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:37:12 has no hits.
FMO12409.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-28 09:33:33 Download gff for
FMO12409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11570-RA | 1..678 | 117..794 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:29 Download gff for
FMO12409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11570-RB | 37..831 | 1..795 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:16 Download gff for
FMO12409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11570-RB | 37..831 | 1..795 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:16 Download gff for
FMO12409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11956812..11957518 | 90..795 | 98 | <- | Minus |
| 3L | 11957580..11957667 | 1..89 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:29 Download gff for
FMO12409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11949912..11950618 | 90..795 | 98 | <- | Minus |
| arm_3L | 11950680..11950767 | 1..89 | 96 | | Minus |
