Clone FMO12410 Report

Search the DGRC for FMO12410

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:124
Well:10
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG8446-RD
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12410.5prime Sequence

236 bp (236 high quality bases) assembled on 2012-11-28

> FMO12410.5prime
AGTCGACATGGTTCGACCAACACTAGTTGCGCTGGCTAAGCGCGTACCGC
TCATACACTTCCGCAAGGGTGGTGCAGGAGTGCCGGGCGCCCAGACAGCA
AACCAGAAGTTGGCCGGTGGACCAGCAATTGAGGACTATGAGCTGCCGGC
ACGATTTGCCCGCAAGCCAATTGATCCCGAAGAGGCGGCTTACATTAATA
ATGGGGGTATTCCAAACGCAAGCTTTCTAGACCATT

FMO12410.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG44242-RA 426 CG44242-RA 88..297 8..217 1035 99.5 Plus
CG44242-RB 456 CG44242-RB 217..327 107..217 540 99.1 Plus
CG44242-RB 456 CG44242-RB 88..189 8..109 510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16196690..16196799 108..217 535 99.1 Plus
2R 25286936 2R 16196471..16196572 8..109 510 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:36:53 has no hits.

FMO12410.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-28 09:33:31 Download gff for FMO12410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8446-RD 79..300 1..222 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:15 Download gff for FMO12410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG44242-RA 81..302 1..222 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:06 Download gff for FMO12410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG44242-RA 81..302 1..222 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:06 Download gff for FMO12410.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16196464..16196572 1..109 96 -> Plus
2R 16196692..16196804 110..222 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:15 Download gff for FMO12410.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12083969..12084077 1..109 96 -> Plus
arm_2R 12084197..12084309 110..222 97   Plus