Clone FMO12412 Report

Search the DGRC for FMO12412

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:124
Well:12
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13557-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12412.5prime Sequence

335 bp (335 high quality bases) assembled on 2012-11-28

> FMO12412.5prime
AGTCGACATGGTCTCCAAGTGGCTGCGCATCTTGGTTCTATTTCTTCTGG
GTCTTGCAACCTCGCGGGCCTCCCTATTTCGCTCCGAGTCGCCGAAACCA
CAGTTGAGCTGGTGGCACAAACAGTACTACCAGTCGCTATGGCAACAGAG
GCTGCGGTTTACGACGACTCCCCGGCCAGGAGCCACTCCCGAATCGGATG
AAGCCAGATTGGTGTATCCCTGCTACTGCTACAAGCCAACTCCCGAGGGC
TTGGCCACTGCCAGTCCGGTGGAGCAGCGAATGATTGAGACCAAGGAAAT
ATTCTTCTTGAACAAAGCAAGCTTTCTAGACCATT

FMO12412.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13557-RA 436 CG13557-RA 10..318 8..316 1545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23475816..23475991 316..141 880 100 Minus
2R 25286936 2R 23476276..23476409 141..8 670 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:37:06 has no hits.

FMO12412.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-28 09:33:32 Download gff for FMO12412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13557-RA 6..318 1..316 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:24 Download gff for FMO12412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13557-RA 6..318 1..316 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:13 Download gff for FMO12412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13557-RA 6..318 1..316 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:13 Download gff for FMO12412.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23475816..23475991 141..316 100 <- Minus
2R 23476277..23476413 1..140 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:24 Download gff for FMO12412.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19363339..19363514 141..316 100 <- Minus
arm_2R 19363800..19363936 1..140 97   Minus