FMO12413.5prime Sequence
479 bp (479 high quality bases) assembled on 2012-10-19
> FMO12413.5prime
AGTCGACATGTTCTACCTAATCGGCCTCGGCCTTGGCGACCTGAAGGACA
TCACGGTCAAGGGTCTGGAGATAGTGAAGCAATGCAGTCGCGTCTATCTG
GAGATGTACACCTCGATTCTGGGCTGCAGCCTTGAGGATATGCAAGAGTT
CTATGGACGACCACTGCTGCTAGCCGACCGCGATCTGGTGGAGCAGGGTG
CGGATGAGATCCTGGCGGGTGCGGGCGAATCCGATGTTGCGCTGCTCGTG
GTGGGCGACCCCTTTGGCGCCACCACCCACACAGACTTCATACTGCGCGC
CAAGGAGAAGAACATCCCCTACAAGGTCATCCACAATGCATCGATCATGA
ACGCCGTCGGCTGCTGCGGCCTGCAATTGTACTAATTCGGCGAGACCGTT
TCGATTCCGTACTGGGACGAGACATGGAAGCCGGACAGCTTCTACATTTT
TTATCAAGCTGAATCGCCTGCACAACATG
FMO12413.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:15:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dph5-RA | 1128 | CG31289-RA | 105..576 | 7..479 | 2235 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:15:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22582580..22582916 | 479..142 | 1535 | 97.6 | Minus |
| 3R | 32079331 | 3R | 22582986..22583121 | 142..7 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:15:20 has no hits.
FMO12413.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:11 Download gff for
FMO12413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dph5-RA | 98..579 | 1..479 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:03 Download gff for
FMO12413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dph5-RA | 95..576 | 1..479 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:22 Download gff for
FMO12413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dph5-RA | 95..576 | 1..479 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:22 Download gff for
FMO12413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22582580..22582915 | 143..479 | 97 | <- | Minus |
| 3R | 22582986..22583123 | 1..142 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:03 Download gff for
FMO12413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18408302..18408637 | 143..479 | 97 | <- | Minus |
| arm_3R | 18408708..18408845 | 1..142 | 97 | | Minus |
