FMO12416.5prime Sequence
394 bp (394 high quality bases) assembled on 2012-11-28
> FMO12416.5prime
GTCGACATGGCGAAAATGGCATTCCAGCACCAGGCCGGCACGGCGATGGA
GTGCTTGAGCATTCCCATCACGCTGCACAAGGAGAAGGACTACGACCAGG
AGGGGCGCGAGATCCTCAAGTGCGGCTTCAAGATCGGCGGCGGAATCGAC
CAGGACTACAAGAAAAGCCCTCAGGGATACACGGATTATGGCATCTATGT
GACCGAGGTGCACGAGGGCAGTCCCGCCGCCCGAGCAGGTCTGCGGATCC
ACGACAAGATCCTGCAGTGCAACGGCTACGACTTCACCATGGTCACCCAC
AAAAAGGCCGTGAGCTACATCCGGAAAAACCCGATACTCAACATGCTGGT
GGCCCGCAAGGGCGTGACCTCCACAGCAAGCTTTCTAGACCATT
FMO12416.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3402-RA | 1035 | CG3402-RA | 115..486 | 4..375 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 652091..652276 | 375..190 | 930 | 100 | Minus |
3L | 28110227 | 3L | 652443..652572 | 190..61 | 650 | 100 | Minus |
3L | 28110227 | 3L | 652711..652767 | 60..4 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:37:24 has no hits.
FMO12416.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-28 09:33:35 Download gff for
FMO12416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3402-RA | 65..443 | 1..380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:38 Download gff for
FMO12416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3402-RA | 112..490 | 1..380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:22 Download gff for
FMO12416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3402-RA | 112..490 | 1..380 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:22 Download gff for
FMO12416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 652087..652276 | 190..380 | 98 | <- | Minus |
3L | 652444..652572 | 61..189 | 100 | <- | Minus |
3L | 652711..652770 | 1..60 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:38 Download gff for
FMO12416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 652087..652276 | 190..380 | 98 | <- | Minus |
arm_3L | 652444..652572 | 61..189 | 100 | <- | Minus |
arm_3L | 652711..652770 | 1..60 | 98 | | Minus |