Clone FMO12416 Report

Search the DGRC for FMO12416

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:124
Well:16
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG3402-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12416.5prime Sequence

394 bp (394 high quality bases) assembled on 2012-11-28

> FMO12416.5prime
GTCGACATGGCGAAAATGGCATTCCAGCACCAGGCCGGCACGGCGATGGA
GTGCTTGAGCATTCCCATCACGCTGCACAAGGAGAAGGACTACGACCAGG
AGGGGCGCGAGATCCTCAAGTGCGGCTTCAAGATCGGCGGCGGAATCGAC
CAGGACTACAAGAAAAGCCCTCAGGGATACACGGATTATGGCATCTATGT
GACCGAGGTGCACGAGGGCAGTCCCGCCGCCCGAGCAGGTCTGCGGATCC
ACGACAAGATCCTGCAGTGCAACGGCTACGACTTCACCATGGTCACCCAC
AAAAAGGCCGTGAGCTACATCCGGAAAAACCCGATACTCAACATGCTGGT
GGCCCGCAAGGGCGTGACCTCCACAGCAAGCTTTCTAGACCATT

FMO12416.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3402-RA 1035 CG3402-RA 115..486 4..375 1860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 652091..652276 375..190 930 100 Minus
3L 28110227 3L 652443..652572 190..61 650 100 Minus
3L 28110227 3L 652711..652767 60..4 285 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:37:24 has no hits.

FMO12416.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-28 09:33:35 Download gff for FMO12416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3402-RA 65..443 1..380 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:38 Download gff for FMO12416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3402-RA 112..490 1..380 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:22 Download gff for FMO12416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3402-RA 112..490 1..380 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:22 Download gff for FMO12416.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 652087..652276 190..380 98 <- Minus
3L 652444..652572 61..189 100 <- Minus
3L 652711..652770 1..60 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:38 Download gff for FMO12416.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 652087..652276 190..380 98 <- Minus
arm_3L 652444..652572 61..189 100 <- Minus
arm_3L 652711..652770 1..60 98   Minus