Clone FMO12417 Report

Search the DGRC for FMO12417

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:124
Well:17
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG1890-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12417.5prime Sequence

356 bp (356 high quality bases) assembled on 2012-11-28

> FMO12417.5prime
AGTCGACATGACAGACCCCCGCATCCGGCAACTGGTGATTAAATCCGGAG
TGGTCCGGCGGTTGACCAGGGAGAAGTACTGCTACGCCAAGGAAGTGCTG
ACCGAGCAGGCGCGGTTGGAGAAGCTCAGGGGCGACGGAGCCGACGACCA
CGTACTGCGCAAGCAGGAGGAGGTCATCCAGGAGTGCATCATGATGGTGC
CCGACTCCAAGAGAAGACTGCAGAAGGAGTACGAGGTACTGGAAAAGTAC
CTCGCCGATGAGCAGGACCTGATCGAGACAGATTCGTATAAGAAGGCAGC
AGAGATCCTCAAAGATGCCAAAGCTGAACTGGAGACCGCAAGCTTTCTAG
ACCATT

FMO12417.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1890-RA 704 CG1890-RA 140..469 8..337 1650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31743629..31743837 8..216 1045 100 Plus
3R 32079331 3R 31743891..31744013 215..337 615 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:37:31 has no hits.

FMO12417.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-28 09:33:36 Download gff for FMO12417.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1890-RA 124..453 8..337 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:41 Download gff for FMO12417.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1890-RA 140..469 8..337 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:24 Download gff for FMO12417.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1890-RA 140..469 8..337 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:24 Download gff for FMO12417.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31743629..31743837 8..216 100 -> Plus
3R 31743893..31744013 217..337 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:41 Download gff for FMO12417.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27569351..27569559 8..216 100 -> Plus
arm_3R 27569615..27569735 217..337 100   Plus