Clone FMO12418 Report

Search the DGRC for FMO12418

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:124
Well:18
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG10375-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12418.5prime Sequence

789 bp (789 high quality bases) assembled on 2012-11-28

> FMO12418.5prime
AGTCGACATGTCCTCCTCGTCGGCCAGAGACCAACCGGGAACCTCCCATG
ACAACTTCGAGGAATTCTACACAGAAGTGAAAGAAATTGAAAAACGTGAT
TCAGTTTTAACTCCTTCTCAACAAATTGATCGTTTACTTCGTCCAGGTTC
AACGTACTTCAATCTCAATCCGTTTGAGGTGCTCCAAATCGAGCCCGAGG
TCGAATTGGCGGATATAAAAAAGCGATACCGCACCTTGTCAATCCTCGTC
CATCCAGACAAGAATCCCGACAACCAGGAGCGCGCTCAAATGGCATTCGA
TATTGTGTCGCGTTCCTGGAAAATCCTCGAAAACGAACTCACGCGCAAAA
GGTGTCTGGAGGTGTACGAGGAGGCAAAGGGGCGAACGGATCAAATGATT
GCAGAAAAGCGTAAAAAGCTTAAAAAAGAGGGTCGGCCCACTGAGCCAAT
ATCCGAGGACGATCCCACCAAGTACAAGCACGCCATCTACGTTATGGTCA
TGAAACTGTTTGCCGACATGGAGCGTCGACGGCAAAAGCTCGACCAACGC
GACCAGGAGGAGCGAAAGCGAAAGCGCGAAACGGAAATCGAGGAGGAGGA
GCGGATAAAGGCGGACCGCGAATGGCAGCAGAACTTCGAAGAGTCGCGCC
AGAGCCGAGTAAACAGCTGGCATGACTTTCAGTCGGGTGCCGGCAAGTCC
AAGAAAGCCAAGAAACAAAAACATATGACCGGCATGATGGTTCCACCAAA
ATTTAAGCCCGAGTCGCGAGCAAGCTTTCTAGACCATTT

FMO12418.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10375-RA 1008 CG10375-RA 90..852 7..769 3800 99.9 Plus
CG10375-RB 938 CG10375-RB 160..782 147..769 3100 99.8 Plus
tst-RA 4332 CG10210-RA 3903..4275 769..397 1850 99.7 Minus
CG10375-RB 938 CG10375-RB 90..161 7..78 360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23768456..23768828 397..769 1850 99.7 Plus
3R 32079331 3R 23768009..23768329 77..397 1605 100 Plus
3R 32079331 3R 23767801..23767872 7..78 360 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:37:37 has no hits.

FMO12418.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-28 09:33:37 Download gff for FMO12418.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10375-RA 82..855 1..773 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:45 Download gff for FMO12418.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10375-RA 82..855 1..773 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:28 Download gff for FMO12418.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10375-RA 82..855 1..773 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:28 Download gff for FMO12418.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23767793..23767870 1..76 94 -> Plus
3R 23768009..23768329 77..397 100 -> Plus
3R 23768457..23768831 398..773 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:45 Download gff for FMO12418.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19593515..19593592 1..76 94 -> Plus
arm_3R 19593731..19594051 77..397 100 -> Plus
arm_3R 19594179..19594553 398..773 99   Plus