FMO12419.5prime Sequence
986 bp (986 high quality bases) assembled on 2012-11-28
> FMO12419.5prime
GTCGACATGTCATTCTTACGCAGTGCTGTTGGTCTCCTGGCTCGTGTCAA
GCTCTTGGAGGGCTCACCGACTGTGCAAACGAGGCGCCACATCAAGCGAT
GGGTTTCGCCAACGTTACGTGAGCTCGCCCACCGGCAGAAGAAACTAGGA
CCACAAAAGCCAGAGCGGCGTTCTGGGTTCGTGGAGTGGAACCAGCGATC
GGAGCTCTTCGCGTTCGGCAAGCGTTTGGGCGAATCCTTTGAATTGTCGG
AGCTGCAGCGTGCTTTTACAGAGAAATCGTTTGCAGAGCGGGAGGAGGAT
CGTCGTCGGCAGCTAGGCATTGAGGAGTCTGACCTCCAGATGCCTCACAA
TAGCGATCTGGTCGAGAAGGGCCAACAAATTGCCCGTGCCTACGTTGAGG
CCTTCCTGCAGCACCAGTTACCGAAGGTCCCTAATGAAGGACTCCAGGTT
TATCGCCAGTTATCTACTTAGCACCGAAACGCTTGCTCACGTCTCGACCC
ACCTGGGCACAAAGGATCTGATACAGTCTACGGAATACCCGCCCTCGGCC
GAAAGTCAGGCCAAATCTTTACACGCAGTTATTGGCGCCCTGGCCAGTTC
CAGTGGAATCGAGAGGGCTTTCATTTTTGTACGCGATTTCATCTGCACGC
AACTGAATCAAAAGGACCTGTTGGAGGTGTGGACTCCCCAGGAACCAATC
CAGCTGCTGGAGAAGATATGCCAGGAGCGAAAGCTGGGCGAAGCGGAGCC
CCGCCTGCTTGGAGACTGCGGAAAGAACACTGTGCTAGCCGCCTACCAAG
TAGGCATCTACGCCAACCGGCAGCTACTGGGCAAGGGATTCGGTGAGATG
TGAAAACAGCCACAGAGACTGCGGCACTCGACGCTCTGCAGAGCATCTTT
GACACCCGCGACAACCGGAGACCCTTTGACTTTGCCATTCAGCTAGAACA
AAGACCGTGCGACTGCGCAAGCTTTTCTAGACCATT
FMO12419.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL44-RA | 1122 | CG2109-RA | 59..1017 | 7..964 | 4695 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5469568..5470460 | 964..73 | 4290 | 99.4 | Minus |
| 3R | 32079331 | 3R | 5470512..5470578 | 73..7 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:37:44 has no hits.
FMO12419.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-28 09:33:38 Download gff for
FMO12419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL44-RA | 77..1045 | 1..968 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:49 Download gff for
FMO12419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL44-RA | 53..1021 | 1..968 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:33 Download gff for
FMO12419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL44-RA | 53..1021 | 1..968 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:33 Download gff for
FMO12419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5469565..5470459 | 74..967 | 99 | <- | Minus |
| 3R | 5470512..5470583 | 1..73 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:49 Download gff for
FMO12419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1295287..1296181 | 74..967 | 99 | <- | Minus |
| arm_3R | 1296234..1296305 | 1..73 | 94 | | Minus |
