Clone FMO12420 Report

Search the DGRC for FMO12420

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:124
Well:20
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG3893-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12420.5prime Sequence

417 bp (417 high quality bases) assembled on 2012-10-19

> FMO12420.5prime
CCCTTCAATAGTTCCCATTTGATACCAGAGCCCCAGTTCTTTCAACACAC
CCAATCGTGCGAGGATCGAAACATTATAGTACACTATCAGACCAGCGCTC
CTGCTGTCCTCAGCGAAGACACCAGACACGCGAAGATCGAGTCCGAGGAG
AACTGGGATGACGACGAGAGTGTGCCCGATTACGATCCTCAGGTCTACTG
TTCCAGGGCCAACATAGTGAGAGAGCCCAATGGGTTGTTTCCCGCCCAGC
GAAGGGCTTTCATCGAGCAGGAAAAACGTCGTCACTTTGGCGAGGATTAC
GAGGAGGAGAAGAAGCCGCGGAAGGCCAAGGCTCGCGCGGATCTTCGTCC
CACTCCCTACGAGCACAGGAGGCCATACTCAAGGCGCCAGGCAAGCTTTC
TAGACCATTCGTTTTGG

FMO12420.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
arx-RA 892 CG3893-RA 194..583 1..390 1950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18900904..18901251 390..43 1740 100 Minus
3L 28110227 3L 18901320..18901361 42..1 210 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:15:23 has no hits.

FMO12420.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:11 Download gff for FMO12420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3893-RA 133..527 1..398 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:05 Download gff for FMO12420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3893-RA 194..588 1..398 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:25 Download gff for FMO12420.5prime
Subject Subject Range Query Range Percent Splice Strand
arx-RA 194..588 1..398 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:25 Download gff for FMO12420.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18900902..18901251 43..394 99 <- Minus
3L 18901320..18901361 1..42 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:05 Download gff for FMO12420.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18894002..18894351 43..394 99 <- Minus
arm_3L 18894420..18894461 1..42 100   Minus