FMO12423.5prime Sequence
845 bp (840 high quality bases) assembled on 2012-10-19
> FMO12423.5prime
AGTCGACATGTCGGGGCGCCTTAACCACCAGCACGCGGCGTATGCGCATC
GCATGGAACAGGAACACAACCGGGTGCAGGCCACACAGGCAGTGAACAGC
TACTACAGCCATTGGGGTAAGGTCACATCACGCTTCGAAAACTGGACCAA
CAAAGAGTACTATGAGAAGGCGGATCAACAGCTGCAATCCCGTCGCGATC
AGCAGGAGAAGGAGGCAGCTCTTAATGAACGTCGGTCCAGACTTCGCCAG
CTTCTGGCCTCGGAGAGCGAAGAGTACAACAACGAGATGGAGCGACGTCG
CCGGCCTCGGGAACCCGGTGGTGGAGACCTCCAGATGCTTGATCGGGTTA
ACCAGTCGCTTAAGGAGCAAGAGCAACTGCGTCGCAAGCTCGAGATGGAA
GCCAAGTTGTACGGCCGCTGGCGTCATGGCGTCGACGATGAAAAGCTGCT
CTACTAGTCCAAGTCGGACAACGAAGTGCTGGCCAAGCTCAACTGGCTGG
ACCGCCAGATCGAGAGTCAGCAGCAGCGCGAGGAGCAGCAGGCCCTGGCC
GCGGAGAGGCAGCTCCTGCTGCAGCAGGAAATCAGTCGCACGGAACAAGC
TCAAAAGGAGCGCCAGCAGATCCGGGAGCAACAATTTGCGCGAACTGCGT
GCTCTTGCAAGATTCCCACATGTCCGAGCTTCGTCTGCGACAGCAGGAGG
CTGACAAGTTGAAGGAGTAGGAGCAGCACTTTCCAGCTCTTCCTGGGCGA
AACTGGACAAAGAGCGGGGAATTTGCTGGAGGAGAGCAGTGCTCTGGTTG
CTCAAACAGTCGATTCCGGACACGCCCTTCAACCTCAAGAAGATT
FMO12423.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:15:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17230-RC | 3470 | CG17230-RC | 160..990 | 8..845 | 3910 | 98.5 | Plus |
| CG17230-RB | 1736 | CG17230-RB | 160..990 | 8..845 | 3910 | 98.5 | Plus |
| CG17230-RA | 1927 | CG17230-RA | 351..1181 | 8..845 | 3910 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:15:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11464062..11464892 | 8..845 | 3705 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:15:18 has no hits.
FMO12423.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:10 Download gff for
FMO12423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17230-RB | 157..990 | 1..845 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:01 Download gff for
FMO12423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17230-RA | 348..1181 | 1..845 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:20 Download gff for
FMO12423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17230-RA | 348..1181 | 1..845 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:20 Download gff for
FMO12423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11464059..11464892 | 1..845 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:01 Download gff for
FMO12423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7289781..7290614 | 1..845 | 97 | | Plus |
