Clone FMO12428 Report

Search the DGRC for FMO12428

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:124
Well:28
Vector:pMK33-CFH-BD
Associated Gene/TranscriptRab1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12428.5prime Sequence

641 bp (641 high quality bases) assembled on 2012-11-28

> FMO12428.5prime
AGTCGACATGTCATCTGTGAATCCGGAATACGATTATCTCTTTAAGTTGC
TGCTTATTGGAGACTCGGGCGTTGGAAAGTCCTGTCTTCTGTTGCGATTT
GCCGATGACACATATACAGAAAGTTATATCAGCACAATCGGAGTGGATTT
CAAAATCAGGACTATAGAACTCGACGGAAAGACCATTAAACTGCAAATCT
GGGATACTGCTGGCCAGGAGCGCTTCCGCACCATCACGTCTTCATATTAT
AGGGGCGCCCATGGCATCATTGTCGTATACGATTGCACGGACCAGGAGTC
TTTCAACAATGTGAAGCAGTGGCTGGAGGAGATCGAGCGGTATGCCTGTG
AGAATGTCAACAAGTTGCTGGTTGGCAACAAGAGCGACTTGACCACCAAG
AAAGTAGTCGACCACACCACAGCTGCGGAGTACGCCGCCCAGTTAGGCAT
TCTATTCCTTGAAACTTCGGCCAAGAGCGCCACCAACGTTGAGCAGGCCT
TCATGACGATGGCGGCGGAGATCAAGAATCGCGTCGGGCCGCCGTCCAGC
GCCACTGACAACGCTAGCAAAGTGAAAATCGATCAAGGACGTCCAGTGGA
AAACACCAAATCCGGTTGCTGCGCAAGCTTTCTAGACCATT

FMO12428.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
Rab1-RA 1804 CG3320-RA 268..882 8..622 3060 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21267225..21267453 428..200 1145 100 Minus
3R 32079331 3R 21266951..21267146 622..427 965 99.5 Minus
3R 32079331 3R 21267620..21267740 151..31 605 100 Minus
3R 32079331 3R 21267510..21267557 199..152 240 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:38:10 has no hits.

FMO12428.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-28 09:33:42 Download gff for FMO12428.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab1-RA 308..935 1..626 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:04 Download gff for FMO12428.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab1-RA 259..886 1..626 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:47 Download gff for FMO12428.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab1-RA 259..886 1..626 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:47 Download gff for FMO12428.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21267620..21267740 31..151 100 <- Minus
3R 21266947..21267145 428..626 98 <- Minus
3R 21267226..21267453 200..427 100 <- Minus
3R 21267510..21267557 152..199 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:04 Download gff for FMO12428.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17092669..17092867 428..626 98 <- Minus
arm_3R 17092948..17093175 200..427 100 <- Minus
arm_3R 17093232..17093279 152..199 100 <- Minus
arm_3R 17093342..17093462 31..151 100 <- Minus