FMO12428.5prime Sequence
641 bp (641 high quality bases) assembled on 2012-11-28
> FMO12428.5prime
AGTCGACATGTCATCTGTGAATCCGGAATACGATTATCTCTTTAAGTTGC
TGCTTATTGGAGACTCGGGCGTTGGAAAGTCCTGTCTTCTGTTGCGATTT
GCCGATGACACATATACAGAAAGTTATATCAGCACAATCGGAGTGGATTT
CAAAATCAGGACTATAGAACTCGACGGAAAGACCATTAAACTGCAAATCT
GGGATACTGCTGGCCAGGAGCGCTTCCGCACCATCACGTCTTCATATTAT
AGGGGCGCCCATGGCATCATTGTCGTATACGATTGCACGGACCAGGAGTC
TTTCAACAATGTGAAGCAGTGGCTGGAGGAGATCGAGCGGTATGCCTGTG
AGAATGTCAACAAGTTGCTGGTTGGCAACAAGAGCGACTTGACCACCAAG
AAAGTAGTCGACCACACCACAGCTGCGGAGTACGCCGCCCAGTTAGGCAT
TCTATTCCTTGAAACTTCGGCCAAGAGCGCCACCAACGTTGAGCAGGCCT
TCATGACGATGGCGGCGGAGATCAAGAATCGCGTCGGGCCGCCGTCCAGC
GCCACTGACAACGCTAGCAAAGTGAAAATCGATCAAGGACGTCCAGTGGA
AAACACCAAATCCGGTTGCTGCGCAAGCTTTCTAGACCATT
FMO12428.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab1-RA | 1804 | CG3320-RA | 268..882 | 8..622 | 3060 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21267225..21267453 | 428..200 | 1145 | 100 | Minus |
3R | 32079331 | 3R | 21266951..21267146 | 622..427 | 965 | 99.5 | Minus |
3R | 32079331 | 3R | 21267620..21267740 | 151..31 | 605 | 100 | Minus |
3R | 32079331 | 3R | 21267510..21267557 | 199..152 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:38:10 has no hits.
FMO12428.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-28 09:33:42 Download gff for
FMO12428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab1-RA | 308..935 | 1..626 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:04 Download gff for
FMO12428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab1-RA | 259..886 | 1..626 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:47 Download gff for
FMO12428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab1-RA | 259..886 | 1..626 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:47 Download gff for
FMO12428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21267620..21267740 | 31..151 | 100 | <- | Minus |
3R | 21266947..21267145 | 428..626 | 98 | <- | Minus |
3R | 21267226..21267453 | 200..427 | 100 | <- | Minus |
3R | 21267510..21267557 | 152..199 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:04 Download gff for
FMO12428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17092669..17092867 | 428..626 | 98 | <- | Minus |
arm_3R | 17092948..17093175 | 200..427 | 100 | <- | Minus |
arm_3R | 17093232..17093279 | 152..199 | 100 | <- | Minus |
arm_3R | 17093342..17093462 | 31..151 | 100 | <- | Minus |