Clone FMO12429 Report

Search the DGRC for FMO12429

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:124
Well:29
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13026-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12429.5prime Sequence

379 bp (379 high quality bases) assembled on 2012-11-28

> FMO12429.5prime
GTCGACATGAAGAGCCTTTTTGCTACCATGTTGGGCTACTTGCTCCTTGG
GTTGGTGCTGTCTCATGCCAGCTTTGCAACTGCCACAAATGGAGTTATTC
CAGCAGTGATTCCGGCAGTGCCCGCTACTGTTCCTCGCCTGGTTCCCGTG
GCCACCAGCCATCAGTTTGTCACTCGAAACTGGAATCGAGTTTTCGTGCC
CCCCGCCACGGTGGCCACTTATCCCAACACCTATGTTAAGTACAGCGGTG
GCTATCCGGCGTATCCCGCCTACAATTACCCATACGCCACCACCTATCCG
TACACCTATCCCTACTACTATCCCACTTATAACGTTGGATATGGTTACAA
GGGTGTCTGGGCAAGCTTTCTAGACCATT

FMO12429.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13026-RC 1431 CG13026-RC 45..399 6..360 1775 100 Plus
CG13026-RB 599 CG13026-RB 45..399 6..360 1775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16725710..16726054 360..16 1725 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:38:16 has no hits.

FMO12429.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-28 09:33:43 Download gff for FMO12429.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13026-RB 40..405 1..367 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:08 Download gff for FMO12429.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13026-RB 40..405 1..367 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:51 Download gff for FMO12429.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13026-RB 40..405 1..367 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:51 Download gff for FMO12429.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16725711..16726056 13..359 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:08 Download gff for FMO12429.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16718811..16719156 13..359 99   Minus