FMO12449.5prime Sequence
843 bp (843 high quality bases) assembled on 2012-10-19
> FMO12449.5prime
GTCGACATGAGCGAAACAAATGAGTCCAATGACACGGCCGCCCAATCCGC
CGAGGGCGAGCGGCCCAGCTTTTTGGTGGGTGATGAGATCGACGAGCGGG
CCGCCGAGGCGGGCGAGGCATGTGACGAGTTCCCCCTGAAGATGCAGAAC
GATGTCCGCCAGAATGGCGATATTTCCGAGCGGCGCAAGCGGTTAAGGCC
GAGTATGTCGCGTGGCACAGGGCTGGGCCAGGACCGGCACCAGGATCGCG
ACTTCCACATCGCAACCACCGAGGAGTTCGTGAAGCGCTTTGGCGGCACC
CGAGTGATCAACAAGGTCCTGATTGCCAACAACGGTATCGCGGCCGTCAA
GTGCATGCGATCCATCCGGAGATGGGCGTACGAAATGTTTAAGAACGAGC
GGGCCATTAGGTTTGTGGTGATGGTCACTCCGGAGGATCTAAAGGCGAAT
GCCTAATACATCAAGATGGCGGATCACTATGTGCCCGTGCCCGGCGGATC
GAACAACAACAACTACGCCAATGTCGAGCTCATCGTGGACATTGCTCTTC
GCACCCAAGTGCAGGCCGTGTGGGCTGGTTGGGGTCATGCCTCCGAGAAC
CCGAAGCTGCCGGAGCTGCTTCACAAAGAGGGTCTGGTGTTCCTTGGCCC
TCCGGAACGTGCCATGTGGGCGCTGGGCGACAAGGTGGCCTCCTCTATTG
TGGCCCAAACGGCCGAGATTCCCACCCTGCCGTGATCCGGTTCGGACCTG
AAGCCTAGTACAGTGCAAAGATCAAGATTTCCAGTGAGCTCTCGCCCGAG
GTTGTGTGACCAATGTGGACAGGGTCTGGCCGCATTTAACAAT
FMO12449.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:15:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ACC-RG | 7814 | CG11198-RG | 471..1312 | 7..842 | 4010 | 98.8 | Plus |
| ACC-RF | 7860 | CG11198-RF | 517..1358 | 7..842 | 4010 | 98.8 | Plus |
| ACC-RC | 7950 | CG11198-RC | 607..1448 | 7..842 | 4010 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:15:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7982640..7983009 | 565..196 | 1835 | 99.7 | Minus |
| 2R | 25286936 | 2R | 7981189..7981477 | 842..560 | 1155 | 96.5 | Minus |
| 2R | 25286936 | 2R | 7984880..7985003 | 198..75 | 620 | 100 | Minus |
| 2R | 25286936 | 2R | 7985064..7985134 | 77..7 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:15:34 has no hits.
FMO12449.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:15 Download gff for
FMO12449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ACC-RC | 573..1419 | 1..843 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:14 Download gff for
FMO12449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ACC-RC | 602..1448 | 1..843 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:29 Download gff for
FMO12449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ACC-RC | 602..1448 | 1..843 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:29 Download gff for
FMO12449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7981188..7981472 | 565..843 | 96 | <- | Minus |
| 2R | 7982641..7983007 | 198..564 | 99 | <- | Minus |
| 2R | 7984881..7985002 | 76..197 | 100 | <- | Minus |
| 2R | 7985066..7985139 | 1..75 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:14 Download gff for
FMO12449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3868693..3868977 | 565..843 | 96 | <- | Minus |
| arm_2R | 3870146..3870512 | 198..564 | 99 | <- | Minus |
| arm_2R | 3872386..3872507 | 76..197 | 100 | <- | Minus |
| arm_2R | 3872571..3872644 | 1..75 | 96 | | Minus |
