Clone FMO12450 Report

Search the DGRC for FMO12450

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:124
Well:50
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG17352-RD
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12450.5prime Sequence

404 bp (271 high quality bases) assembled on 2012-10-19

> FMO12450.5prime
AGTCGACATGGCATATCCACGCGACTATGGTATCGAACACATCCTCACCT
GCGAGGCGGACAACTGCCAGGTGCGTTTGGATTTTACCGACTTCCAGCTG
GGCCTCACCTCCACCCTAGAGATCTTCGACTCCAATGGCCAGATGCTGGA
CTCCTATACGGGTGAGCACTTCCGTCCGCCGATCACGGTGAGCAGCGGCA
AGTCTCTGCTCCTGCAGTTTCGAGGAAATTCCGCCACCGGAGTGGGTTTT
CGCGCGGAGGTTAGCTTCGTATCCTCCAGCAGCTCAAGGACGAGCGACTG
GTGCCCTACCAGATGCGGGGGAATGGTACCGAACTGGTGGCCCCTTACCT
GGAGAACTGATCAAAATGCCCGACTGCGGTGGTTGATGCTCCGATTATAA
GCCC

FMO12450.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:15:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG17352-RE 3223 CG17352-RE 785..1156 8..370 1560 96.2 Plus
CG17352-RA 3160 CG17352-RA 722..1093 8..370 1560 96.2 Plus
CG17352-RB 3174 CG17352-RB 722..1093 8..370 1560 96.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8355148..8355450 309..8 1465 99.7 Minus
Blast to na_te.dros performed on 2014-11-28 18:15:36 has no hits.

FMO12450.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:15 Download gff for FMO12450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17352-RC 720..1069 4..349 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:16 Download gff for FMO12450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17352-RB 720..1069 4..349 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:30 Download gff for FMO12450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17352-RB 720..1069 4..349 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:30 Download gff for FMO12450.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8355144..8355452 4..312 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:16 Download gff for FMO12450.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8348244..8348552 4..312 98   Minus