FMO12451.5prime Sequence
662 bp (570 high quality bases) assembled on 2012-10-19
> FMO12451.5prime
TCGACATGGAATTAGAGAATATTGTGGCCAATACGGTCTACTTGAAAGCG
AGAGAAGGTGGTTCCGACAGCAACAAGGGAAAGAGCAAAAAATGGCGCAA
AATATTGCAATTCCCACACATATCGCAATGCATCAACCTGAAAGACAAAT
TAGATATAAGCTATGGCTACGTGATAGATCAGCAACCCATTGGTCGTGAG
CTCTTCCGTCTGTTTTGCGAGAACAAACGGCCCGTCTACTTTCGCTACAT
CACCTTCCTGGATGAGGTGGTCAAATACGAGATCGAGTACATCTCGAACC
GCATATTCATTGGCCATGACATCGGCCGTCGCTTCTTGGATGTCGAGGCA
CAGCTGGAGCTGCGCAACGGCAGCGGGGGCGACGCCTTGGACGCCGAGAC
GCAGGAGGAGCTGCTGCTCAACAGCAGCAATGCCAATCCAACTGAAACAG
CTGAGACTGAACACTGCAACAATACCACCGCCAACAACTGCAACAACATC
AACAACAGCAACAACTCGCAGCACAGCAGCGACATCATTCACAAGAAGCT
GGACCGCGCATCCCAACGGCAACGACCCCCCCTGGGAACGGGACCACCCC
CAGGACGAACGGGGACAAAGGTCCAGGGCCAGAGGCCTTGCCAGCGAAAA
GGTGGGGCGAAA
FMO12451.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:15:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gprk2-RB | 3545 | CG17998-RB | 1091..1702 | 6..616 | 2840 | 98 | Plus |
| Gprk2-RA | 4690 | CG17998-RA | 1139..1750 | 6..616 | 2840 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:15:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31453647..31453930 | 271..554 | 1390 | 99.3 | Plus |
| 3R | 32079331 | 3R | 31453464..31453586 | 152..274 | 615 | 100 | Plus |
| 3R | 32079331 | 3R | 31453309..31453406 | 56..153 | 490 | 100 | Plus |
| 3R | 32079331 | 3R | 31433837..31433890 | 6..59 | 270 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:15:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6918 | 350..537 | 231 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6896 | 419..576 | 224 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2431 | 396..537 | 215 | 67.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2484 | 402..557 | 212 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2527 | 419..543 | 166 | 64.6 | Plus |
FMO12451.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:16 Download gff for
FMO12451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gprk2-RA | 1131..1746 | 1..616 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:19 Download gff for
FMO12451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gprk2-RA | 1135..1750 | 1..616 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:32 Download gff for
FMO12451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gprk2-RA | 1135..1750 | 1..616 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:32 Download gff for
FMO12451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31433833..31433888 | 1..57 | 94 | -> | Plus |
| 3R | 31453311..31453406 | 58..153 | 100 | -> | Plus |
| 3R | 31453466..31453586 | 154..274 | 100 | -> | Plus |
| 3R | 31453651..31453993 | 275..616 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:19 Download gff for
FMO12451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27259555..27259610 | 1..57 | 94 | -> | Plus |
| arm_3R | 27279033..27279128 | 58..153 | 100 | -> | Plus |
| arm_3R | 27279188..27279308 | 154..274 | 100 | -> | Plus |
| arm_3R | 27279373..27279715 | 275..616 | 96 | | Plus |
