FMO12452.5prime Sequence
910 bp (907 high quality bases) assembled on 2012-10-19
> FMO12452.5prime
GTCGACATGAGCGGATCCAATGCAAAGTCCTCGGGGACTGGCTTCGGCAG
CCACATTCCCAGCATCGAGGAAAAGAACAAGCAGATCCAGCAGGAAACCA
TGATGGAGAAGCTGCGGGCCAAGTACCGGAACAAGCCAAAGAGCTACGAG
GAGATCAAGAAGTCGGTGCGTATGTACTTTATCGAGAAGCACTACCCTCT
GGACCCCCTGTGCAAGGCCACGCTGCAGTCGGCGCTGGACAAGTTGCAGC
ACTACATCAAGGTCACGTCACGCCACGGCCTTGTGGAGCGTTTGGAGAGC
CTCTCGCGCCAGTTGGGCCTCAAGTTCATGGAGGACCAGCAGCTTCTCTT
CATATCAACGGACATGTTCTACGTAGAGATCCTGCTGGACGCCGCCGGCA
GTCTGTCGGACGTCAAGGTGCACCACGAGTGCAAGATCGAGCAACAGTCC
AGCTAGCTAGTGGCCTGCCTCAAGTCTGGCGACTTTGCAGACTTTACGGT
TCAACTCGAGGGTCTGTCCTCCATTTACCAGCTGAATGCCGAGCCCAAGG
TGAAAAAGAAGGCGTTTGTAGCGCTTCAGGCCATGGAGACGGATATCCAG
AGCCTATACCAACTGCACCTGCAAGGTCACTCCGGAGACAGCTACTCACT
TATGACAAGTTCATCGGTGGGTCTTTGTGCTGCCCCGTCGCGGTGGCCAT
CCTATGAGGCTTACTTATTTTCTGCCCGCCGCTCCACCTTCCCGAAGGGG
ATCCCAAACTGGCCAGCGGCGATTTTCACCATCGACCAGGTATGCGAAGC
AGCTACGGACTGAGTGCCACTATCAATCTCGAAGCTCATCAACCAACAAA
CTGCAGACTTTGCCAACGGTGACTTTGGTCCGCGATTGCCCAACGGGGTT
GGAGTGTCCC
FMO12452.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:15:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED1-RC | 4957 | CG7162-RC | 152..1048 | 7..904 | 4300 | 99 | Plus |
| MED1-RB | 4185 | CG7162-RB | 152..1048 | 7..904 | 4300 | 99 | Plus |
| MED1-RA | 4962 | CG7162-RA | 152..1048 | 7..904 | 4300 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:15:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21633334..21634197 | 904..40 | 4010 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:15:42 has no hits.
FMO12452.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:17 Download gff for
FMO12452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED1-RB | 144..1051 | 1..910 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:21 Download gff for
FMO12452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED1-RA | 146..1053 | 1..910 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:34 Download gff for
FMO12452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED1-RA | 146..1053 | 1..910 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:34 Download gff for
FMO12452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21633328..21634196 | 41..910 | 98 | <- | Minus |
| 3L | 21634262..21634300 | 1..40 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:21 Download gff for
FMO12452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21626428..21627296 | 41..910 | 98 | <- | Minus |
| arm_3L | 21627362..21627400 | 1..40 | 92 | | Minus |
