FMO12454.5prime Sequence
1095 bp (1002 high quality bases) assembled on 2012-10-19
> FMO12454.5prime
GTCGACATGTCGCTGCCCAACGAACAGACAAACTTGCCGCACAATCCCAG
CCAACCAGCATCCGCAGACACACAGACACCAGCCACGGCAACAGGAACCA
CAACACCATCCACACCAACACCATCCACAAGAACCACACAACCAAATGAG
CTGAAACACCGCCTGACGCCACTGAATGTGCGTCGTTTATCGGGCTACGT
TAATCCGCAAGCGATCAGCGATAATGCTGGCGATGATCCCCCGCCCACCA
CCATTAACATTGGCCTCTTCAACAACAATAACAATAATAATACAAATAAT
AATAATAATAATAACAACAACAACAACAACACAGCATCAACAACGCCACC
ATCTGCATATGCCACACCACCAATATACCAACAACAGTTGTCCACACTGA
CAGCAACAACACCGCTAGATGTGGCACCGGATGATAAATACAGATTGTTT
ACCATTTTCAATGGAAACGATCCCGACAATGAGAAATTGTCGGGCCTACC
ACATTCGACAACCGGTTCACTAAGCTCAATCATCACGACGTCCATAGCAT
CCTCCGAACCGGATCCTGGAGCGGTGAGCGGCGGCGGCGGCGGCGGCGGC
GGCGGCGGCGGCGGCGGCGGAATAGGAGGAGCAGGTGGCGGCGGCGGCGG
CGGCGGAGGCAATGGCGGTATCGGATCGGGTGCCCTGGTGGCAGCGGATG
CCTCCAGCATTGCCGGCATCAATGGCAGCTCCGAGGAGAAGTTGGCGCTC
AATCGACCCGGCATCAAGCAGGAGAAGTGGACAACTATCCTACTGCGGTA
TCCATTCCGTTCTTTCTGGCCGGGATTGGTACCATCGGAGCTGGCATTGT
CCTGGGACGCGTTGAGAAATGGTATGTCTTCAGAACGTAAGCGAGCTGTT
CATCCTGTTGCCGGCACTTTTGGTCTCAAGGCCACTTGAAATGTGCCTGG
CATCGCCGTCTCTTCCACGCAAGTGAATCTGGGCAACATGACCAGCAGAC
TGGCGTAATACTGATGATAGTGTGAATCATAGCATTGGTGCCAGTCCCAG
ACGAACGCGTGCCCTCTCTTCTGGATGGCCATGTTTGTCGGGTGA
FMO12454.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:15:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33181-RH | 4107 | CG33181-RH | 965..2045 | 7..1087 | 4905 | 97.4 | Plus |
| CG33181-RG | 4232 | CG32714-RG | 1090..2170 | 7..1087 | 4905 | 97.4 | Plus |
| CG33181-RF | 4113 | CG32714-RF | 971..2051 | 7..1087 | 4905 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8510242..8510704 | 7..469 | 2315 | 100 | Plus |
| X | 23542271 | X | 8512352..8512750 | 469..866 | 1945 | 99.7 | Plus |
| X | 23542271 | X | 8513909..8514088 | 865..1041 | 445 | 90.7 | Plus |
Blast to na_te.dros performed 2014-11-28 18:15:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2412 | 310..413 | 188 | 67.9 | Plus |
FMO12454.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:19 Download gff for
FMO12454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33181-RF | 964..1989 | 1..1022 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:26 Download gff for
FMO12454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33181-RF | 965..1990 | 1..1022 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:37 Download gff for
FMO12454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33181-RF | 965..1990 | 1..1022 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:37 Download gff for
FMO12454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8510236..8510704 | 1..469 | 99 | -> | Plus |
| X | 8512353..8512750 | 470..866 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:26 Download gff for
FMO12454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8404269..8404737 | 1..469 | 99 | -> | Plus |
| arm_X | 8406386..8406783 | 470..866 | 99 | -> | Plus |
