FMO12456.5prime Sequence
1095 bp (980 high quality bases) assembled on 2012-10-19
> FMO12456.5prime
AGTCGACATGGATGATAATACGGAGAACACAGATGGAAAGCGCGTGACGC
GGGCTAGAACTCGTCGCTTGTCCCTTCTGGAAACGGACAGTCGTCCGAGC
ACTCCGCAGTTGGATACGGTTGCGGAACTCGGTACCGCTTCGCCACGTGC
CACACGTCGCACACGTCTGAACTCGTCCACTTTAGATGTGAGGACTCCAA
CACGAACCAGGCGCGCATCCTTGGCACGCGGTGAAACTCCCGAGCCGACG
ACGCCCTCTTCCGTGAAAAGGACAGCTCGCACGCCAGCTAAAAACACCAG
ATCTGTGCGCCAACAGCTTACACTAACAGAGGAACCTGAGGAAAATGAGG
TCAAGCAGGAAAAGCCCAGCCCCAGTCCAAGCCCTGTGCCCAAAGAGGGC
AAGGGAAAGGCACAGCGGAAGCCCAGTGTCAGTCCGAGTCCAGGGCGAAC
ACTCACACCCAATCAGCAGAGTGATGAGAAACGAGTGACGCGTTCAATGT
CTCAGACTCCACCAATGCCCACTCGTTCGTCCAGTAATACGCCTCGTGAT
CTTAACGATTCACCCAAAGTTGAGCAAAAAGCTAAACCCAATATTAAAAC
CACTCCCAAAGTGGCAGTCAGGCTCGAGAAACTTTCAATGGACAAATTCT
CTGGCAAGAAGATGGAAAAGGCGAAGCCATTGATTGTACCGGATGAACTC
AAGGATAATGGAGTTGTTGAGGAGCAAAATAAATCTATCACTGAAGCCCA
TTCACAGGCACCAGAACACACGAATCAGCCCAACCTGACAAGGATGCTGG
CAAAACATCATTTGTGAAGTCATTTACTACACTTTCGAAAATTCAAGGTT
CAAGTAAGCTCTTCACCCTGATGAGAGCGCAGATACATTACAAAAATAAC
TCCTATCCTCGACATCCCAGAAACTTGAGAAACATGGATGATGTGTTTGA
AACACTACGCGTCGAGTCCCCCAAAGTTGAAGAAAATCGAGACTCTGCAG
AAGTCATACTGTGCACTCCCTGAAATTAAGAAAAAGACTGCCGTGGGTAG
AACAATGAAATTAAAACGGAAACCGAAACTTCCCAAAGATTGACC
FMO12456.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sle-RB | 4775 | CG12819-RB | 163..1262 | 8..1093 | 4870 | 97.2 | Plus |
| sle-RA | 4676 | CG12819-RA | 100..1163 | 44..1093 | 4690 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:15:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10333650..10334527 | 131..1002 | 3930 | 98.1 | Plus |
| 3R | 32079331 | 3R | 10333496..10333586 | 44..134 | 440 | 98.9 | Plus |
| 3R | 32079331 | 3R | 10333277..10333313 | 8..44 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:15:54 has no hits.
FMO12456.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:20 Download gff for
FMO12456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sle-RB | 100..1208 | 1..1095 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:30 Download gff for
FMO12456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sle-RB | 156..1264 | 1..1095 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:41 Download gff for
FMO12456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sle-RB | 156..1264 | 1..1095 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:41 Download gff for
FMO12456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10333497..10333583 | 45..131 | 98 | -> | Plus |
| 3R | 10333651..10334628 | 132..1095 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:30 Download gff for
FMO12456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6159219..6159305 | 45..131 | 98 | -> | Plus |
| arm_3R | 6159373..6160350 | 132..1095 | 96 | | Plus |
