Clone FMO12459 Report

Search the DGRC for FMO12459

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:124
Well:59
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG34135-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12459.5prime Sequence

440 bp (440 high quality bases) assembled on 2012-11-28

> FMO12459.5prime
AATCGACATGCAAAACCTCTCCATATCCTGCTCATTGGTCTGCCTCATCA
TTCTGGGTAGTGCCGCCCTTGTGGGCGCCTTTGGCGTCTGCCAGCGCCAA
ATCAGCGCCATTTTAATCACAGGAGTGATGTATTTACTGGCGGCGCTCTT
TGCCCTCTTCACGCTCATGATCATTCACTTCAAGCGGCAGCAGGGACGTC
CCATGCTGGACAGCGACTACGATGGCACGGTGGATGGAATAGTGGCGCGA
CCAGGAGGCGTGGCCATAATGGCCAAGCCGCTGCTGGGAGCACGCATCTT
CCTCACCTCGTGGAGCCTCGACTTGGGATGGGGCGGTGTGGTGCTCTGCG
CCATCACCTCGGTACTGTGGATCCTGCTCTCCAAAATCATGCGGTACAAC
CCCTTCTCGGCGCTCATGATTGCAAGCTTTCTAGACCATT

FMO12459.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG34135-RD 3470 CG34135-RD 1827..2240 8..421 2070 100 Plus
CG34135-RC 7398 CG34135-RC 5755..6168 8..421 2070 100 Plus
CG34135-RB 3470 CG34135-RB 1827..2240 8..421 2070 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8750436..8750714 421..143 1395 100 Minus
3R 32079331 3R 8750780..8750915 143..8 680 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:38:34 has no hits.

FMO12459.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-28 09:33:46 Download gff for FMO12459.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34135-RB 1820..2245 1..428 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:20 Download gff for FMO12459.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34135-RB 1820..2245 1..428 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:01 Download gff for FMO12459.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34135-RB 1820..2245 1..428 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:01 Download gff for FMO12459.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8750431..8750713 144..428 98 <- Minus
3R 8750780..8750919 1..143 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:20 Download gff for FMO12459.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4576153..4576435 144..428 98 <- Minus
arm_3R 4576502..4576641 1..143 97   Minus