Clone FMO12460 Report

Search the DGRC for FMO12460

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:124
Well:60
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG8539-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12460.5prime Sequence

414 bp (414 high quality bases) assembled on 2012-11-28

> FMO12460.5prime
AGTCGACATGTGGAAAATTCTGTGCGGGATCGTCGTTCTCGTGACGATTG
TGGTGAATCAGCTGTCTGAAGCAAGGGAAGTCCGCCGGCGAAGAGGCCTT
ATGCTCCAATTGGACAACTACCTTAGCTACGATGGAATAATGCAGTATCT
GGATGAGCTGGCTCTGTCCCACAGTAACCGGGTGACCCTAAAGGATGTGG
CTCGGACCTACGAGAACAGAGCCCTGAAAATGGCGATAATAACCAACGGA
GATGGACGTCCCGGAAAGAGAGTGATATTCTTGGATGCTGCCCTCCATTC
GCGTGAGTGGATGACTCCCGCCGCCGCCCTGCTCACCATCCATAAACTGG
TGGTGGAGTTTGCGGAGAATTCCGACCTTTTGACTGATTACGATTGGCAC
ATTATGCCACTGGC

FMO12460.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8539-RB 1538 CG8539-RB 197..605 6..414 2045 100 Plus
CG8539-RA 1319 CG8539-RA 37..445 6..414 2045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7498227..7498635 414..6 2045 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:38:40 has no hits.

FMO12460.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-28 09:33:47 Download gff for FMO12460.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8539-RA 32..445 1..414 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:24 Download gff for FMO12460.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8539-RA 32..445 1..414 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:05 Download gff for FMO12460.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8539-RA 32..445 1..414 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:05 Download gff for FMO12460.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7498227..7498638 1..414 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:24 Download gff for FMO12460.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7491327..7491738 1..414 99   Minus