FMO12461.5prime Sequence
697 bp (565 high quality bases) assembled on 2012-10-19
> FMO12461.5prime
GTCGACATGCACGGCCTCCTCGGATCCGCCGGGGACTTCGTGTCGGGCGG
AAGGGGCAGATCCCTGGCGCTGGAGCTTCATGCCCGCTGCTTTGACGTCT
GGCTGGCGAACGCCAGGGGCACCACCCATTCCCGCGGGCACCGCACGCTC
CAGACAAGTGACGCCCGCTTCTGGCGATTCAGCTGGCACGAGATTGGCAT
CTACGACCTGCCCGCCATCGTGGATTACGTGCTGGCGAGGACGAATCGCC
GCCAGCTGCACTACGTCGGGCACTCGCAGGGCACCACCGTTCTCCTGGTG
CTGCTCTCGCAGCGGCCGGAGTACAATGCGCGGTTCGCCAATGCCGCCCT
GTTGGCTCCGGTGGCATTCCTCCAGCACCTGAGCAGTCCGCCACTGCGGC
TGCTGGCCAGCGACAGCTCCATGGCCACGCTGCTGCTGAACAAACTTGTT
TCTCCACGAACTTCTCCCGGCGTCGGCGCTGACCCCAGGTGGGCGGGCCA
GTTCTTCTGCACCCGCCTCCCGGCCCCACCTACGCCCCTCTGGCACCCCT
CTTTCACCTTCCGGTCTAAGGTGGGGCTTCCACCGACTATCCCATTGGAA
CCGTGGGGAATACCAATTAAAATATGCCGGGGCCATAAATTTTAACCATA
CAAAGGCCCCCAAAAATTTTTTTTCCCCCTTTTGAAGGAAAAAATTT
FMO12461.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:16:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11406-RD | 4502 | CG11406-RD | 289..866 | 7..599 | 2530 | 96.8 | Plus |
| CG11406-RC | 4430 | CG11406-RC | 289..866 | 7..599 | 2530 | 96.8 | Plus |
| CG11406-RB | 1361 | CG11406-RB | 211..788 | 7..599 | 2530 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:16:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24206226..24206652 | 433..7 | 2120 | 99.8 | Minus |
| 2R | 25286936 | 2R | 24205867..24205970 | 537..429 | 265 | 93.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:16:01 has no hits.
FMO12461.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:22 Download gff for
FMO12461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11406-RC | 266..843 | 1..592 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:35 Download gff for
FMO12461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11406-RB | 205..782 | 1..592 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:45 Download gff for
FMO12461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11406-RB | 205..782 | 1..592 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:45 Download gff for
FMO12461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24206230..24206654 | 1..429 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:35 Download gff for
FMO12461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20093753..20094177 | 1..429 | 99 | | Minus |
