FMO12468.5prime Sequence
686 bp (686 high quality bases) assembled on 2012-11-28
> FMO12468.5prime
AGTCGACATGTCCTTATCGGCCATAGCCAAGCCAATACTCTACTCGTATT
GGCGCAGCTCGTGCTCCTGGCGCGTGCGCATTGCGATGAACCTGAAGGAG
ATACCCTACGACATCAAGCCGATCAGCCTGATCAAATCCGGTGGCGAGCA
GCACTGCAATGAGTACCGCGAGGTGAATCCAATGGAGCAGGTGCCCGCCC
TACAGATTGATGGACACACCCTCATCGAATCGGTAGCCATAATGCACTAC
CTGGAGGAAACACGTCCCCAGCGACCACTCCTGCCACAGGACGTCCACAA
GCGGGCCAAGGTGCGCGAAATAGTCGAGATCATTTGCTCTGGCATCCAGC
CCCTGCAGAACCTCATCGTGCTCATCCATGTGGGCGAGGAGAAGAAGAAG
GAGTGGGCCCAGCACTGGATTACACGAGGCTTCCGGGCGGTTGAGAAGGC
GCTGTCCACTTCGGCCGGCAAATATTGCGTGGGCGATGAGATCTCCATGG
CGGACTGCTGCCTCGTACCTCAGGTGTTCAATGCCCGAAGATTCCACGTC
GACTTGCGACCGTATCCCATAATTCTGCGCATCGATCGCGAACTGGAGAG
CAATCCGGCATTCCGGGCGGCCCATCCCTCCAATCAACCGGACTGTCCGC
CGGAGCTGCCCAACAAAGCAAGCTTTCTAGACCATT
FMO12468.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstZ2-RB | 2202 | CG9363-RB | 359..1018 | 8..667 | 3300 | 100 | Plus |
| GstZ2-RA | 1062 | CG9363-RA | 73..710 | 30..667 | 3190 | 100 | Plus |
| GstZ2-RC | 1093 | CG9363-RC | 50..685 | 32..667 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9458203..9458534 | 540..209 | 1660 | 100 | Minus |
| 3R | 32079331 | 3R | 9458595..9458774 | 209..30 | 900 | 100 | Minus |
| 3R | 32079331 | 3R | 9457999..9458127 | 667..539 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:39:12 has no hits.
FMO12468.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-28 09:33:51 Download gff for
FMO12468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9363-RB | 341..1006 | 1..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:46 Download gff for
FMO12468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstZ2-RB | 353..1018 | 1..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:22 Download gff for
FMO12468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstZ2-RB | 353..1018 | 1..667 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:22 Download gff for
FMO12468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9457999..9458125 | 541..667 | 100 | <- | Minus |
| 3R | 9458203..9458533 | 210..540 | 100 | <- | Minus |
| 3R | 9458595..9458772 | 32..209 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:46 Download gff for
FMO12468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5283721..5283847 | 541..667 | 100 | <- | Minus |
| arm_3R | 5283925..5284255 | 210..540 | 100 | <- | Minus |
| arm_3R | 5284317..5284494 | 32..209 | 100 | <- | Minus |
