FMO12470.5prime Sequence
587 bp (587 high quality bases) assembled on 2012-11-28
> FMO12470.5prime
AGTCGACATGGGCAAGAAGAATTCAAAATTGAAGCAGGACACCATCGATC
GGCTGACAACAGACACATACTTCACTGAAAAGGAAATTCGTCAATGGCAC
AAGGGCTTTCTCAAAGACTGTCCGAATGGCTTGCTGACCGAACAAGGCTT
CATCAAAATCTATAAGCAATTCTTCCCCGACGGAGACCCCAGCAAATTTG
CCTCCCTGGTCTTTCGTGTCTTCGATGAGAATAATGATGGCGCCATTGAG
TTCGAGGAGTTCATTCGGGCCCTGTCCATCACATCACGCGGAAATCTGGA
CGAGAAGCTGCACTGGGCTTTCCGTTTGTACGACGTGGACAACGATGGCT
ATATAACACGCGAGGAGATGTACAACATAGTGGACGCCATCTACCAGATG
GTAGGACAACAGCCGCAGACGGAGGACGAGAACACGCCGCAGAAGCGGGT
GGACAAGATCTTCGATCAGATGGACAAGAACCACGACGATCGACTGACGC
TGGAGGAGTTCCGCGAGGGCAGTAAAGCTGATCCACGTATAGTGCAGGCG
TTAAGTTTAGGTGGTGATGCAAGCTTTCTAGACCATT
FMO12470.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Frq2-RD | 4161 | CG5907-RD | 649..1210 | 7..568 | 2810 | 100 | Plus |
Frq2-RC | 4028 | CG5907-RC | 516..1077 | 7..568 | 2810 | 100 | Plus |
Frq2-RB | 2322 | CG5907-RB | 379..940 | 7..568 | 2810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18201292..18201456 | 404..568 | 825 | 100 | Plus |
X | 23542271 | X | 18169989..18170151 | 404..566 | 485 | 86.5 | Plus |
X | 23542271 | X | 18200655..18200745 | 146..236 | 455 | 100 | Plus |
X | 23542271 | X | 18201143..18201232 | 315..404 | 450 | 100 | Plus |
X | 23542271 | X | 18200830..18200909 | 236..315 | 400 | 100 | Plus |
X | 23542271 | X | 18192499..18192563 | 7..71 | 325 | 100 | Plus |
X | 23542271 | X | 18169696..18169783 | 315..402 | 290 | 88.6 | Plus |
X | 23542271 | X | 18199773..18199823 | 96..146 | 255 | 100 | Plus |
X | 23542271 | X | 18168403..18168493 | 146..236 | 215 | 82.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:38:47 has no hits.
FMO12470.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-28 09:33:48 Download gff for
FMO12470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Frq2-RC | 512..1078 | 1..572 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:29 Download gff for
FMO12470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Frq2-RB | 377..943 | 1..572 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:08 Download gff for
FMO12470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Frq2-RB | 377..943 | 1..572 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:08 Download gff for
FMO12470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18199124..18199148 | 72..96 | 100 | -> | Plus |
X | 18199774..18199822 | 97..145 | 100 | -> | Plus |
X | 18200655..18200744 | 146..235 | 100 | -> | Plus |
X | 18200830..18200908 | 236..314 | 100 | -> | Plus |
X | 18201143..18201231 | 315..403 | 100 | -> | Plus |
X | 18201292..18201459 | 404..572 | 98 | | Plus |
X | 18192497..18192563 | 1..71 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:29 Download gff for
FMO12470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18095325..18095492 | 404..572 | 98 | | Plus |
arm_X | 18086530..18086596 | 1..71 | 94 | -> | Plus |
arm_X | 18093157..18093181 | 72..96 | 100 | -> | Plus |
arm_X | 18093807..18093855 | 97..145 | 100 | -> | Plus |
arm_X | 18094688..18094777 | 146..235 | 100 | -> | Plus |
arm_X | 18094863..18094941 | 236..314 | 100 | -> | Plus |
arm_X | 18095176..18095264 | 315..403 | 100 | -> | Plus |