Clone FMO12470 Report

Search the DGRC for FMO12470

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:124
Well:70
Vector:pMK33-CFH-BD
Associated Gene/TranscriptFrq2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12470.5prime Sequence

587 bp (587 high quality bases) assembled on 2012-11-28

> FMO12470.5prime
AGTCGACATGGGCAAGAAGAATTCAAAATTGAAGCAGGACACCATCGATC
GGCTGACAACAGACACATACTTCACTGAAAAGGAAATTCGTCAATGGCAC
AAGGGCTTTCTCAAAGACTGTCCGAATGGCTTGCTGACCGAACAAGGCTT
CATCAAAATCTATAAGCAATTCTTCCCCGACGGAGACCCCAGCAAATTTG
CCTCCCTGGTCTTTCGTGTCTTCGATGAGAATAATGATGGCGCCATTGAG
TTCGAGGAGTTCATTCGGGCCCTGTCCATCACATCACGCGGAAATCTGGA
CGAGAAGCTGCACTGGGCTTTCCGTTTGTACGACGTGGACAACGATGGCT
ATATAACACGCGAGGAGATGTACAACATAGTGGACGCCATCTACCAGATG
GTAGGACAACAGCCGCAGACGGAGGACGAGAACACGCCGCAGAAGCGGGT
GGACAAGATCTTCGATCAGATGGACAAGAACCACGACGATCGACTGACGC
TGGAGGAGTTCCGCGAGGGCAGTAAAGCTGATCCACGTATAGTGCAGGCG
TTAAGTTTAGGTGGTGATGCAAGCTTTCTAGACCATT

FMO12470.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
Frq2-RD 4161 CG5907-RD 649..1210 7..568 2810 100 Plus
Frq2-RC 4028 CG5907-RC 516..1077 7..568 2810 100 Plus
Frq2-RB 2322 CG5907-RB 379..940 7..568 2810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18201292..18201456 404..568 825 100 Plus
X 23542271 X 18169989..18170151 404..566 485 86.5 Plus
X 23542271 X 18200655..18200745 146..236 455 100 Plus
X 23542271 X 18201143..18201232 315..404 450 100 Plus
X 23542271 X 18200830..18200909 236..315 400 100 Plus
X 23542271 X 18192499..18192563 7..71 325 100 Plus
X 23542271 X 18169696..18169783 315..402 290 88.6 Plus
X 23542271 X 18199773..18199823 96..146 255 100 Plus
X 23542271 X 18168403..18168493 146..236 215 82.4 Plus
Blast to na_te.dros performed on 2014-11-28 18:38:47 has no hits.

FMO12470.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-28 09:33:48 Download gff for FMO12470.5prime
Subject Subject Range Query Range Percent Splice Strand
Frq2-RC 512..1078 1..572 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:29 Download gff for FMO12470.5prime
Subject Subject Range Query Range Percent Splice Strand
Frq2-RB 377..943 1..572 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:08 Download gff for FMO12470.5prime
Subject Subject Range Query Range Percent Splice Strand
Frq2-RB 377..943 1..572 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:08 Download gff for FMO12470.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18199124..18199148 72..96 100 -> Plus
X 18199774..18199822 97..145 100 -> Plus
X 18200655..18200744 146..235 100 -> Plus
X 18200830..18200908 236..314 100 -> Plus
X 18201143..18201231 315..403 100 -> Plus
X 18201292..18201459 404..572 98   Plus
X 18192497..18192563 1..71 94 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:29 Download gff for FMO12470.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18095325..18095492 404..572 98   Plus
arm_X 18086530..18086596 1..71 94 -> Plus
arm_X 18093157..18093181 72..96 100 -> Plus
arm_X 18093807..18093855 97..145 100 -> Plus
arm_X 18094688..18094777 146..235 100 -> Plus
arm_X 18094863..18094941 236..314 100 -> Plus
arm_X 18095176..18095264 315..403 100 -> Plus