FMO12471.5prime Sequence
402 bp (402 high quality bases) assembled on 2012-11-28
> FMO12471.5prime
GTCGACATGGAACCGTCAGCCTGCGAAGATCTCAAGGCCTTCGAGCGGCG
CCTCACCGAAGTGGTTTCATCGTACCGTCCCTCGACGTTCCGCTGGCGCA
TTGTCCTTTCCGCCATGTCCATGTGCACCGCCATCAGCGCCTGGTACTGG
CTACGCGATCCGCGCACCACCGTTGTACCGCTAACGGAGTCCCTCTGGAT
TCATCCCGTCTTCACAGTCGCCACCCTAACATTGGTCGTCCTGTTCATCC
TGGGCATACAGAAACTAGTCATAGCTCCGCAAATAATTACATCGAGAACG
CGAATGGTACTGGGAGACTTTAATATGAGCTGTGACGACACGGGGAAGCT
GATACTCAAGCCGCGGAAAGTAACAACACAGTACAGCAAGTTTCTAGACA
TT
FMO12471.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8009-RA | 804 | CG8009-RA | 159..539 | 7..385 | 1855 | 99.5 | Plus |
| CG8009-RB | 863 | CG8009-RB | 159..551 | 7..385 | 1725 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10638566..10638700 | 101..235 | 675 | 100 | Plus |
| 3L | 28110227 | 3L | 10639214..10639358 | 235..378 | 675 | 99.3 | Plus |
| 3L | 28110227 | 3L | 10638421..10638494 | 27..100 | 370 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 939..977 | 90..53 | 111 | 79.5 | Minus |
FMO12471.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-28 09:33:48 Download gff for
FMO12471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8009-RA | 149..532 | 1..385 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:32 Download gff for
FMO12471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8009-RA | 156..539 | 1..385 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:13 Download gff for
FMO12471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8009-RA | 156..539 | 1..385 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:13 Download gff for
FMO12471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10639215..10639366 | 236..385 | 98 | | Plus |
| 3L | 10638423..10638494 | 29..100 | 100 | -> | Plus |
| 3L | 10638566..10638700 | 101..235 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:32 Download gff for
FMO12471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10632315..10632466 | 236..385 | 98 | | Plus |
| arm_3L | 10631523..10631594 | 29..100 | 100 | -> | Plus |
| arm_3L | 10631666..10631800 | 101..235 | 100 | -> | Plus |
