FMO12473.5prime Sequence
542 bp (542 high quality bases) assembled on 2012-11-28
> FMO12473.5prime
AGTCGACATGTTTTGTTTACTTTTGCGCCGCTCTGCAGTTCATAATTCCT
GCAAATTAATCAGTAAACAGATTGCCAAGCCCGCGTTCTACACACCCCAC
AATGCTCTGCACACCACAATACCGCGGCGGCATGGCGAGTTCGAATGGCA
GGATCCCAAGTCCACGGATGAAATAGTGAACATCACATATGTGGACAAGG
ATGGAAAGCGCACCAAGGTCCAGGGCAAAGTGGGCGACAATGTTCTGTAC
TTGGCCCATCGCCATGGAATCGAGATGGAAGGCGCCTGTGAGGCTTCGCT
GGCCTGCACCACCTGTCACGTGTACGTCCAGCATGATTACCTGCAGAAGT
TAAAAGAGGCCGAGGAGCAGGAGGACGACCTGCTGGATATGGCGCCATTT
CTGCGCGAGAACTCCCGGCTCGGCTGTCAGATACTCCTCGACAAGAGTAT
GGAGGGCATGGAACTGGAGCTGCCCAAGGCCACCAGGAACTTCTACGTCG
ATGGGCACAAGTCCAAGCCACATGCAAGCTTTCTAGACCATT
FMO12473.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fdxh-RB | 723 | CG4205-RB | 49..564 | 8..523 | 2565 | 99.8 | Plus |
| Fdxh-RA | 715 | CG4205-RA | 41..556 | 8..523 | 2565 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9370354..9370702 | 523..175 | 1730 | 99.7 | Minus |
| 3L | 28110227 | 3L | 9370904..9371018 | 122..8 | 575 | 100 | Minus |
| 3L | 28110227 | 3L | 9370765..9370816 | 174..123 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:39:19 has no hits.
FMO12473.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-28 09:33:51 Download gff for
FMO12473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fdxh-RA | 20..542 | 8..532 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:49 Download gff for
FMO12473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fdxh-RA | 41..563 | 8..532 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:24 Download gff for
FMO12473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fdxh-RA | 41..563 | 8..532 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:24 Download gff for
FMO12473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9370347..9370702 | 175..532 | 98 | <- | Minus |
| 3L | 9370765..9370816 | 123..174 | 100 | <- | Minus |
| 3L | 9370904..9371018 | 8..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:49 Download gff for
FMO12473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9363447..9363802 | 175..532 | 98 | <- | Minus |
| arm_3L | 9363865..9363916 | 123..174 | 100 | <- | Minus |
| arm_3L | 9364004..9364118 | 8..122 | 100 | | Minus |
