FMO12476.5prime Sequence
779 bp (762 high quality bases) assembled on 2012-10-19
> FMO12476.5prime
AGTCGACATGATGAACGCCGTGTCGCGTGCTTACGTCAGAGGCGGAGCCC
AGGTCCTCTCCACGGGATTGAAGGCGAGCGGCGTGGCCGTCAACTCGATG
GCCAATCGCCAGGCACACACCGACCTGCAGGTGCCAGACTTCTCGGCATA
CCGCCGGGAGTCCGTGAAGGACAGTCGTCGTCGCAACGACACCGCCGAGG
AGCGCAAGGCCTTCTCCTACTTGATGGTCGGCGCCGGGGCCGTGGGCGGT
GCCTATGCGGCCAAGGGCCTGGTTAACACCTTCATCGGATCGATGAGCGC
CTCCGCCGAAGTGCTGGCCATGGCCAAGATCGAGATCAAGCTGTCCGACA
TCCCGGAGGGCAAGTCGGTTACTTTCAAGTGGCGCGGAAAGCCCCTGTTC
ATCCGCCACCGCACGGCCGCGGAAATCGAGACCGAGCGAAATGTGCCCAC
ATCCACGCTGCGCGATCCGGAGGCTGATGATGTAGGTACCGTGGAGTGGG
TCGATTCGCTAATGCTGTTACCCATTTCCTCTTTAGCAACGTGTGATCAA
GCCCGAGTGGCTGGTGGTCATCGGAGTGTGCACGCATCTGGGCTGTGTGC
CCATCGCGAACGCCCGGCGACTGGGGTGGCTACTACTGCCCCTGCCACGG
CTCCCACTACGACGCCTCCGGAAGGGATCCGCAAGGGACCCGCGCCCCTC
AACTTTGGAGGTGCCCACCCACGAGTTCCCCAAGAAGGGGTCTTTCTCTA
GGGTCGGCCTAAAGGGATCTGGTTATCGG
FMO12476.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:16:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RFeSP-RE | 1000 | CG7361-RE | 85..558 | 8..481 | 2355 | 99.8 | Plus |
| RFeSP-RD | 1118 | CG7361-RD | 85..558 | 8..481 | 2355 | 99.8 | Plus |
| RFeSP-RB | 851 | CG7361-RB | 85..558 | 8..481 | 2355 | 99.8 | Plus |
| RFeSP-RE | 1000 | CG7361-RE | 559..752 | 537..733 | 910 | 98.5 | Plus |
| RFeSP-RD | 1118 | CG7361-RD | 559..752 | 537..733 | 910 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:16:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1612795..1613424 | 733..101 | 3000 | 99.4 | Minus |
| 2L | 23513712 | 2L | 1613983..1614076 | 101..8 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:16:17 has no hits.
FMO12476.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:26 Download gff for
FMO12476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RFeSP-RA | 100..842 | 1..748 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:48 Download gff for
FMO12476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RFeSP-RB | 78..564 | 1..487 | 98 | == | Plus |
| RFeSP-RB | 565..765 | 543..748 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:55 Download gff for
FMO12476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RFeSP-RB | 78..564 | 1..487 | 98 | == | Plus |
| RFeSP-RB | 565..765 | 543..748 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:55 Download gff for
FMO12476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1612782..1613423 | 102..748 | 98 | <- | Minus |
| 2L | 1613983..1614081 | 1..101 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:48 Download gff for
FMO12476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1612782..1613423 | 102..748 | 98 | <- | Minus |
| arm_2L | 1613983..1614081 | 1..101 | 96 | | Minus |
