Clone FMO12477 Report

Search the DGRC for FMO12477

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:124
Well:77
Vector:pMK33-CFH-BD
Associated Gene/TranscriptZasp66-RN
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12477.5prime Sequence

405 bp (347 high quality bases) assembled on 2012-10-19

> FMO12477.5prime
GTCGACATGACGACCAGCAGATCATCGGCGTCCGCGTCATTCAGTCGACC
GGCTTTCTGGAAGGTGCCCGGTTACGAATTGCCCACGTCCTATCGTCCAC
AGCCGACCCCAAAACCGCCGCTCGTACCGCTGCCATCGCCCTGCAGGCGG
CGCAGCAGCAGCGGACTGAAGAAGCGCGTCCATTTTGCCGATGAGCAAAA
CGTGGGGGTGCAAGTGGGCAGCCCAGCGCATGGCGAACTTCTAAGAGGCG
ACATCATCTCGAAGATCGGCGAGTACGACGCACGCGACCTGAGTCATGCG
GATGCACAGCAGCTGTTCCGCGGGGGCTGGCAACGAGATCCGGCCTGGTG
GGTGGACCAGGGACCAACCAAAATTCGCCCAACACGCAGGGGTGGCACCT
CAGGA

FMO12477.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
Zasp66-RO 1493 CG6416-RO 113..501 7..405 1685 96.5 Plus
Zasp66-RN 1793 CG6416-RN 113..501 7..405 1685 96.5 Plus
Zasp66-RE 1725 CG6416-RE 113..501 7..405 1685 96.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:16:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8624483..8624685 7..209 1015 100 Plus
3L 28110227 3L 8626960..8627094 207..342 615 98.5 Plus
Blast to na_te.dros performed on 2014-11-28 18:16:20 has no hits.

FMO12477.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:27 Download gff for FMO12477.5prime
Subject Subject Range Query Range Percent Splice Strand
Zasp66-RE 108..467 1..368 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:50 Download gff for FMO12477.5prime
Subject Subject Range Query Range Percent Splice Strand
Zasp66-RE 110..469 1..368 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:57 Download gff for FMO12477.5prime
Subject Subject Range Query Range Percent Splice Strand
Zasp66-RE 110..469 1..368 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:57 Download gff for FMO12477.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8624480..8624683 1..207 98 -> Plus
3L 8626961..8627110 208..361 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:50 Download gff for FMO12477.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8617580..8617783 1..207 98 -> Plus
arm_3L 8620061..8620210 208..361 96   Plus