FMO12503.5prime Sequence
1095 bp (996 high quality bases) assembled on 2012-10-30
> FMO12503.5prime
CGACATGAGTCGCATTTTATTTATTTTGTTGCTACTTATTGTGACGCAAC
TGAGCGAGTTGCAGGCGGCAGCATTTTCTGTGCGCCAAAATCGTTTTGAT
GAAGTTCCTGATTTGCAGACTCCTGCACCTCTGGCCACTTCCACTGAATC
TTCTAAGAAACCCGAAAAAGCTACCAGTGGTCTGCTGAAAAAATGCCTTC
CCTGCAGCGATGGTATAAGATGCGTGCCCCAAATCCAGTGTCCCGCCCAC
GTTCGCATGGAAAGCCATGAAAAGCCCCAAATTTGCGATCTCCCGGCTGG
AAAATTCGGCTACTGCTGCGAGACTGGACAGAATCACACTGCTCCCAAGC
CGGAGACCTCTCCCAAGGAGCGTCGATCCGGATTTCCCACCATTCTGTCA
CCCGCAGTTTTGGATGAGGCGCGTCGCAATTTCGAGCACTTGATGCATGG
AGTTGCGCAGATTCCGGTGCGCCGTGGCTTTCCCGATTTTGCCCATGGCC
TGGTTTTCCACTCGACGGCCAAGGATGACCTTCACAACTTCGCCATATCG
AACAGTGCCATTGAACAAGTGATGACCACCCAGTTGTTTGGGAAGAAGGA
GCAGGTGCCCGTAGAAGATTTCATCACCAACAATGTGCCCATCAAGTTCA
CTGAGACTCCGCTGGCACACCATTGCCAACCGCCCCCAGTTTGCGGCAAT
ATTCGGTCTGTTTATCGCAGCATGGACGGCACTTGCAATAATCCAGAACC
ACAGAGATCTCTGTGGGGTGCTGCTGGTCAACCGATGGAGCGCATGCTGC
CCCCCGCCTATGAAGATGGTATCTGGACACCGCGTGCTCACTCTTCTGAC
GGCACTCCGCTGTTGGGCGCCCGTAAAATCTCACGAACTCTGCTCTCGGA
CGTTGATCGTCCTCATCCTAAGTACATCTTATGGGTGATGCAGTTTGGAC
AAGTCTTGCTCATGACATTTCCACAACTTCTTCAATCACGGCTCGAGATG
GCAGCTGGTGCAATGCTGTTCCCCGATGAAAGTAGCTCTTAAGTCTCAGC
AAGCCATTGGCTGCATGCGATCCAGGTTGAACGGTGTCGATTCTT
FMO12503.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:28:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pxt-RB | 2716 | CG7660-RB | 118..1202 | 5..1080 | 4980 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:28:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17720029..17720818 | 169..958 | 3860 | 99.2 | Plus |
| 3R | 32079331 | 3R | 17719571..17719736 | 5..170 | 830 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:28:04 has no hits.
FMO12503.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:24 Download gff for
FMO12503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxt-RB | 114..1175 | 1..1054 | 98 | <- | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:57 Download gff for
FMO12503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxt-RB | 112..1173 | 1..1054 | 98 | <- | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:15 Download gff for
FMO12503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxt-RB | 112..1173 | 1..1054 | 98 | <- | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:15 Download gff for
FMO12503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17719565..17719736 | 1..170 | 98 | -> | Plus |
| 3R | 17720031..17720818 | 171..958 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:57 Download gff for
FMO12503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13545287..13545458 | 1..170 | 98 | -> | Plus |
| arm_3R | 13545753..13546540 | 171..958 | 99 | -> | Plus |
