FMO12505.5prime Sequence
1079 bp (956 high quality bases) assembled on 2012-10-30
> FMO12505.5prime
CGACATGGCCACCAAACGCGTGCTGACGCCTAATATTTTGGAGAATGATA
ACACTGACGTGACGTCATCCAATCCACAAAAGAAATTCAAAGAGCAACTG
GATTTTTCGTCAGACGAAGTGGAGAACATTGATTGGGGTGACAATGATGA
CTTCGATTTGGCGCTGATTGCAGCTATGGATTCTATATCCAATCATCGAT
TGGAGCTCACCAAGTGGCAGCGTTGCGAAGTGGTGCGGCTGGAGCAGCTC
CCCAATAGAAAAGGCCTTAAAGTGCATGTTAAGAGGATTTCTGGCGGGGA
TCCGGAGACAGCTGATTGCCAACTGCTACCGCCGTGGAATTGCATGCCAA
TGCAAGTTGGAGACACTGTCTCCCTGTTGGGCAAGTGGGATCCGTCTGCA
GGATGCTATGTGGTCGATAAGGAGCAGGGCTACTGCGTGTCCCATCCGGA
TTTCCTCATTTCCGGCACCACAGTCACCGGTTCCCTGTTTTGCAAACGGA
AATCTGTTCTGCAGGAACGATTTCGCGGTCTGGACTCGGGAAACTCTGTT
ATGGTCATTGGCACTCTGGTGCACGAATTGCTGCAAAAGGTTCTACGCCA
GAAGCTCTTCGATAAAAAACACATTCAATCTGCCCTCCAGGAGATGCTGG
CCAGCTCTTCTTTGGCTCATTTACTCTATGCCAGCAATCTCATCCAGGTG
GAAATGGAGGATCATCTGATGAAATTCATTGATCCCATTGTCAGTTTTGT
GGCCCAATATGTGAAGGGTGAACCGCCAAGTGTTTTGCTGCCCGAAGTCT
ATAGAGGTCAAATCCACGAGATATGCGATATAGAGGAGACCTCTGGGTTC
CACAACTGGGACTCAAGGGTAAGTGATGTCTCCGTAAGGTAAAAAATCAA
CGGGCAGAGGGAGGAGATCATACCACTGGAACTGAGACGGCCGAGCCAGC
TTCTCATGTACACAGGCCATGCTGCTCTACCAACTGATGCACTCTGCCCA
GGCAGGATACTCATTCGGGAATGCTCTGTACCTCAAGAAGGGATCATACC
GAAAGTGGCTAGCGGGAGAAACCGAACAG
FMO12505.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:28:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2990-RB | 3683 | CG2990-RB | 91..1179 | 5..1079 | 4875 | 97.5 | Plus |
| CG2990-RC | 3680 | CG2990-RC | 91..1176 | 5..1079 | 4820 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:28:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10010571..10011116 | 5..550 | 2730 | 100 | Plus |
| X | 23542271 | X | 10011174..10011710 | 551..1072 | 1795 | 93.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:28:18 has no hits.
FMO12505.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:25 Download gff for
FMO12505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2990-RC | 67..1154 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:07 Download gff for
FMO12505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2990-RB | 89..1179 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:22 Download gff for
FMO12505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2990-RB | 89..1179 | 1..1079 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:22 Download gff for
FMO12505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10010569..10011116 | 1..550 | 99 | -> | Plus |
| X | 10011174..10011716 | 551..1079 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:07 Download gff for
FMO12505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9904602..9905149 | 1..550 | 99 | -> | Plus |
| arm_X | 9905207..9905749 | 551..1079 | 95 | | Plus |
