FMO12506.5prime Sequence
1099 bp (966 high quality bases) assembled on 2012-10-30
> FMO12506.5prime
AGTCGACATGAAAGCTACTCTGCTCACTGTGGTGGCACTCACTGCAGTGG
TTGCCCTAGTTGGAGCCGCCGATCCTGAATGCATATACCGGAGGACTAGG
AACCTTCCGATGCACTGGCCGAAACCCCTGAACTGTTCCTCCTACTACCG
TTGCACCGCCAAGAACGCCGTTCGCACGGTGACGTGTGCACCCGGCAAGG
AGTACAACCCCAAGAATGGCAAGTGCACAATGGCAGGACGAAGTCTCTGC
AAGCTGAGTCTTTTAGCTCCACTCGCTGAGGCCACCAATGTGTGCTCCAC
CGAGGTGAACGGAGCGTACATAGCCAATAGTGGTTCTTGTGGCGAGTTCT
ACATCTGCGACGAGCAGATTGCCTATCCACAGAAGTGCGATTTAGGAAGC
TTCTTCAATGAAACCCTGGCCGCCTGCATACCGGATGCAAACTCCACGTG
CTGGCAGAACCTGTGCATCAATAAGACCAATGGTGTCTTTGTCGAAAATG
AGGCGAACTGCGGTAGCTACTACGTGTGCTCCAATGGAGAAGCCACTCTT
CAGACTTGTCCCCAAGGCAGCTTTTTCAACACCTCAGTTGCCGCCTGTAC
TGTCGATCAAGGAAACTCACAATGCTGGGTTAACTACTGCATTGGACAGG
ATGATGGGTCCGCTGTGGCCGACAAGTCCAACTGCTCCTTGTTCTATGTG
TGCTCCAACAATACGGCTACTGCTCAAGAATGTCCCGAAGGAAGCTATTT
TGAGAGTAATAACTGGGGTTGTGTTCCCGGCACTTGCACCACAGAGTCAC
CATGCGATGATTCCACAACCACTACCACTGAATCTTGTGCTGAGGAGACA
ACGGAACCTCCGGCATCCTGCGATTGCGGTGATATAAGAACGCAGACTTC
ATTCCCGATGAGAAACTGTCGCAAGTACTTCATCTGCATTGATGGTGTCC
TGGTGGCCGCGGAATGCGGCAAGGGTTACGGTGTTCAATGCCTAACCTCA
TGTTTGTTGAGTTGATTGCTGACAACACCTGGCTGTGGTTGGCGATGTAC
GATTGGCCGAGCCAAAGTGGAATCCCCAGACTTGCCACAGGTACTCCAG
FMO12506.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:28:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43896-RD | 6617 | CG43896-RD | 54..1124 | 8..1079 | 4910 | 97.9 | Plus |
| CG43896-RC | 6474 | CG43896-RC | 54..1124 | 8..1079 | 4910 | 97.9 | Plus |
| CG43896-RB | 4207 | CG43896-RB | 54..1124 | 8..1079 | 4910 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:28:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11976572..11977322 | 279..1028 | 3380 | 98.4 | Plus |
| 3L | 28110227 | 3L | 11976228..11976496 | 13..281 | 1345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:28:25 has no hits.
FMO12506.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:26 Download gff for
FMO12506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6947-RA | 45..1085 | 1..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:12 Download gff for
FMO12506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43896-RB | 48..1088 | 1..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:27 Download gff for
FMO12506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43896-RB | 48..1088 | 1..1044 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:27 Download gff for
FMO12506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11976224..11976495 | 8..280 | 98 | -> | Plus |
| 3L | 11976574..11977335 | 281..1044 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:12 Download gff for
FMO12506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11969324..11969595 | 8..280 | 98 | -> | Plus |
| arm_3L | 11969674..11970435 | 281..1044 | 98 | | Plus |
