Clone FMO12508 Report

Search the DGRC for FMO12508

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:125
Well:8
Vector:pMK33-CFH-BD
Associated Gene/TranscriptSet2-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12508.5prime Sequence

1065 bp (944 high quality bases) assembled on 2012-10-30

> FMO12508.5prime
AGTCGACATGGAGGAGTCGGGTCCGCCAAGCAATCCGTCTCCGGTTGCGT
CACGTGGCCGCGGACGTGGTCGCCCGCCGAAAGTGGCGCTTTCCGCGTTG
GGAAATACGCCCCCGCACATTAATCCATCGTTAAAACACGCCGATGCAGA
GGCATCGCCCACGGCGCCGGAGGATCAGGATTCCGGACAGAGCGAGTGCC
GGCGCAGTTCGCGCAAGAAAATCATCAAGTTCGATGTCCGGGATTTGCTA
AACAAGAACCGCAAGGCGCACAAAATCCAGATCGAGGCACGGATCGACTC
GAATCCCAGTACCGGCCACTCCCAGTCAGGCACAACTGCAGCATCCACAT
CCATGTCAACAGCAACAGCATCAGCCGCATCTGCATCCTCAGCCGCGACC
GTGAGCCGTTTGTTTTCCATGTTCGAGATGAGCCACCAATCATTGTCGCC
ACCACCACCGCCGCCAACCGCCCTCGAGATCTTCGCCAAGCCAAGACCCA
CACAGAGTCTGATTGTGGCCCAGGTTACCAGTGAACCATCGGCTGTTGGT
GGCGCACATCCTGTGCAGACGATGGCCGGCCTGCCGCCGGTGACACCTCG
CAAGCGGGGTCGTCCCCGTAAGAGTCAACTAGCGGATGCGGCCATTATTC
CAACTGTCATTGTGCCCAGCTGCTCCGATTCCGATACGAACTCCACCAGC
ACGACCACTTCCAACATGAGCAGTGACAGCGGCGAGCTTCCTGGCTTTCC
CATACAGAAACCCAAGTCCAAGTTGCGGGTCTCACTCAAACGCTTGAAAC
TGGGCGGCCGGCTGGAGTCCTCCGATTCGGGGAACTCGCCATCGTCCTCT
TCGCCGGAGGTTGAGCCACCAGCACTCCAGGATGAGAACCGCCATGGACG
ACGGGCCAAAGCAGAGCAGACCTGAGCCGAATGGTCGATGCCGAGAACTC
CGATTCCGACTCCCAGATCATATCATGGAGATCGAAACGGAGAGCCCCAA
GGGAGAGGGAGGAGCTAGAACAGGGAACGTCAGTCAGGGTGAACCCAGAA
TTTGAATCGACATCG

FMO12508.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
Set2-RB 7372 CG1716-RB 162..1224 8..1065 4850 97.6 Plus
Set2-RA 7583 CG1716-RA 226..1288 8..1065 4850 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13413467..13414472 8..1008 4680 98.8 Plus
Blast to na_te.dros performed 2014-11-28 18:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..6860 327..399 158 68.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6754..6823 332..401 152 68.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2379 333..406 151 68.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6708..6782 322..396 150 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6827 307..399 143 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6775..6842 332..399 133 66.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6794 320..393 132 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6851 307..396 128 63 Plus
roo 9092 roo DM_ROO 9092bp 1097..1163 327..393 128 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2427 327..393 127 67.1 Plus
roo 9092 roo DM_ROO 9092bp 1053..1138 315..401 126 62.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2342..2411 332..401 125 64.3 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 530..595 338..403 123 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2369 338..401 122 65.6 Plus

FMO12508.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:26 Download gff for FMO12508.5prime
Subject Subject Range Query Range Percent Splice Strand
Set2-RB 186..1214 1..1029 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:17 Download gff for FMO12508.5prime
Subject Subject Range Query Range Percent Splice Strand
Set2-RA 222..1250 1..1029 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:32 Download gff for FMO12508.5prime
Subject Subject Range Query Range Percent Splice Strand
Set2-RA 222..1250 1..1029 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:32 Download gff for FMO12508.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13413463..13414491 1..1029 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:17 Download gff for FMO12508.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13307496..13308524 1..1029 97   Plus