FMO12508.5prime Sequence
1065 bp (944 high quality bases) assembled on 2012-10-30
> FMO12508.5prime
AGTCGACATGGAGGAGTCGGGTCCGCCAAGCAATCCGTCTCCGGTTGCGT
CACGTGGCCGCGGACGTGGTCGCCCGCCGAAAGTGGCGCTTTCCGCGTTG
GGAAATACGCCCCCGCACATTAATCCATCGTTAAAACACGCCGATGCAGA
GGCATCGCCCACGGCGCCGGAGGATCAGGATTCCGGACAGAGCGAGTGCC
GGCGCAGTTCGCGCAAGAAAATCATCAAGTTCGATGTCCGGGATTTGCTA
AACAAGAACCGCAAGGCGCACAAAATCCAGATCGAGGCACGGATCGACTC
GAATCCCAGTACCGGCCACTCCCAGTCAGGCACAACTGCAGCATCCACAT
CCATGTCAACAGCAACAGCATCAGCCGCATCTGCATCCTCAGCCGCGACC
GTGAGCCGTTTGTTTTCCATGTTCGAGATGAGCCACCAATCATTGTCGCC
ACCACCACCGCCGCCAACCGCCCTCGAGATCTTCGCCAAGCCAAGACCCA
CACAGAGTCTGATTGTGGCCCAGGTTACCAGTGAACCATCGGCTGTTGGT
GGCGCACATCCTGTGCAGACGATGGCCGGCCTGCCGCCGGTGACACCTCG
CAAGCGGGGTCGTCCCCGTAAGAGTCAACTAGCGGATGCGGCCATTATTC
CAACTGTCATTGTGCCCAGCTGCTCCGATTCCGATACGAACTCCACCAGC
ACGACCACTTCCAACATGAGCAGTGACAGCGGCGAGCTTCCTGGCTTTCC
CATACAGAAACCCAAGTCCAAGTTGCGGGTCTCACTCAAACGCTTGAAAC
TGGGCGGCCGGCTGGAGTCCTCCGATTCGGGGAACTCGCCATCGTCCTCT
TCGCCGGAGGTTGAGCCACCAGCACTCCAGGATGAGAACCGCCATGGACG
ACGGGCCAAAGCAGAGCAGACCTGAGCCGAATGGTCGATGCCGAGAACTC
CGATTCCGACTCCCAGATCATATCATGGAGATCGAAACGGAGAGCCCCAA
GGGAGAGGGAGGAGCTAGAACAGGGAACGTCAGTCAGGGTGAACCCAGAA
TTTGAATCGACATCG
FMO12508.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:28:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Set2-RB | 7372 | CG1716-RB | 162..1224 | 8..1065 | 4850 | 97.6 | Plus |
Set2-RA | 7583 | CG1716-RA | 226..1288 | 8..1065 | 4850 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:28:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13413467..13414472 | 8..1008 | 4680 | 98.8 | Plus |
Blast to na_te.dros performed 2014-11-28 18:28:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6860 | 327..399 | 158 | 68.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6823 | 332..401 | 152 | 68.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2379 | 333..406 | 151 | 68.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6708..6782 | 322..396 | 150 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6827 | 307..399 | 143 | 62.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6775..6842 | 332..399 | 133 | 66.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6794 | 320..393 | 132 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6851 | 307..396 | 128 | 63 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1097..1163 | 327..393 | 128 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2427 | 327..393 | 127 | 67.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1053..1138 | 315..401 | 126 | 62.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2411 | 332..401 | 125 | 64.3 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 530..595 | 338..403 | 123 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2369 | 338..401 | 122 | 65.6 | Plus |
FMO12508.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:26 Download gff for
FMO12508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set2-RB | 186..1214 | 1..1029 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:17 Download gff for
FMO12508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set2-RA | 222..1250 | 1..1029 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:32 Download gff for
FMO12508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set2-RA | 222..1250 | 1..1029 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:32 Download gff for
FMO12508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13413463..13414491 | 1..1029 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:17 Download gff for
FMO12508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13307496..13308524 | 1..1029 | 97 | | Plus |