FMO12509.5prime Sequence
1081 bp (968 high quality bases) assembled on 2012-10-30
> FMO12509.5prime
GTCGACATGGTGCCGAACGAGAAAAGCTTTCCCCGAGGCGGGACAATCCA
CAGCGAAGTCAAAACCGACGACGTGAGCCTGAATATCGTTTTCGGTGCCT
CGCAGAAGAAGGTGAAGAAGGCGCCGAAAGTAAAAGAGAACCTTCTGAGC
TACGAAACCGAGGAACAAAATGGCCAACTGGAGGCCTTCTCCGCGGAAAC
GCTCAATATGGACACGCTGCAGGAGGACATGCTGGTCATGGGAGTGGTCA
AGGAGTTGACAGCCACCGCACTGCAGATCGCTTTGCCCGGTCGGATGTTC
GCCCGCACCTTGGTGGCGGATATATCCGACGCCTACACCCGTGTGGCCAA
GGCGGCCATGTCCGGAGACACCAGCGAGTACCACGACCTTACCGAGCTCT
TCCAGTTGGGCCGCATCGTCTACGGCAAGGCCATCAAAACAGAAAAGCTG
GACACCGGTCGGGTTAGCCTGCTCCTTTCCCTCAAGCCGGCCGATGTGCA
CGGTAATCTGCATCACAAGAGCATTAAGAAGGGTTTCATCTTCTCTGGCG
CCGTGGCGGAGGCTCTGGAGCACGGCTATGTCATCGAGTCGGGAGTACAA
GGACTTCAGGCATTCGTGCCATGCGAGAAGCCAGCTCAGAAGCTACACGT
GGGGGCAGTTGGCTTTCCTAAAAGTCAAAACCGTTCATCACGACACCCAC
CAGAGCACCTGCACCTGTGTCCAGGTGGAGCACGACCAGCTGCGCATCAA
GAGTCAAAACGAGACGAATCTCGACTACATTCTGCCAGGCAGCATTGTAA
AGTTTAAGGTGGCCAAGCATCTGAAAGGATGGCCTCAAAGGCAGCATCAT
GAATGAATCCTTTAGTGCCTACGTCAACGAACATCATCTAGCTAACGCTT
TGGATACTTTGGATGCCTACGAGCTGAATGAGATACATGCAGGGTACTCT
TACGTGATGCCCTAACAAACTAGTGTACTTACTCTTATTCTGAATATCAA
AACTGAGCTGCAGTAGCCAAGATCAGATGAGAGACCAGAGTAGGCATAGT
GTTCAGGTGAAAGCAGGTCCGCCTTGCACGG
FMO12509.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:28:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5728-RA | 4622 | CG5728-RA | 96..1127 | 7..1031 | 4790 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:28:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24332150..24333084 | 1017..88 | 4130 | 97.8 | Minus |
| 3R | 32079331 | 3R | 24333139..24333221 | 89..7 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:28:42 has no hits.
FMO12509.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:27 Download gff for
FMO12509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5728-RA | 89..1127 | 1..1034 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:22 Download gff for
FMO12509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5728-RA | 91..1129 | 1..1034 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:37 Download gff for
FMO12509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5728-RA | 91..1129 | 1..1034 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:37 Download gff for
FMO12509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24332132..24333084 | 88..1034 | 98 | <- | Minus |
| 3R | 24333141..24333223 | 1..87 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:22 Download gff for
FMO12509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20157854..20158806 | 88..1034 | 98 | <- | Minus |
| arm_3R | 20158863..20158945 | 1..87 | 95 | | Minus |
