FMO12511.5prime Sequence
1021 bp (930 high quality bases) assembled on 2012-10-30
> FMO12511.5prime
AGTCGACATGCTCCGTGAGTGCCTGGCGCTGATCGCCCTCCTGCAGCTGG
GGGGCGTGACGCGGGCCCTGCCCACTATACAGGGCGGTAATGCGCGGCAG
CAGTTGGACAAGAGTTTCTTCCAGCCGCCGGAGATCGAGCAGACGATCGA
CGAGGTGCAAAAGATACTAGCCAACGATCCGGCCTTGCCTAGGCTGACGC
GTGGCGAGATCGAGGAGCTGTACGAAAAAGTAACCCGCGAGGAATACGAG
AAAAGCTTGGAGGCAGGCGACATGAGCCGAGCGGACAGCATGCGAGCCCT
CATGCTAGTCCTGCCCTTCAACACGGACAACAACACGGAGGAGAATCTGC
AGGAGCTGTACACGCGGCCTCCGGTGACTCGCGTCATCGACGCCTACACG
CCACCGGATCCGGTGAAGTTTCTAACCGCGGATCCCAGTGCGCTGCTAAG
AAGTACAGTGCCTGGAGGCAATCCTGCGGTGGCAGCCACGACCTACAAGC
CAGCCTACAGCTTACTGCATGGCCAGGCGAATCCTCTCCAGCAGCAGTTC
AGACCCATGCCGCAGGCCACAACCTACCATCCGCCAGCGCCGCCGCCGGT
GGTTTATCAGGACTTCAAACCAGTCACTGCAGCTTCTCAGCCTTCAGCTA
ATCCCGCTGCTGCACCTTCAGCCGCCCGATTCAGCTCCCACTACAGTGCA
AAGAATGCTCAGTTCCTGAGGAAACCAAAGCCCTCCGAGGGAGGAGGTGG
CTCTCTCAGCAGTACAGTGAAGCCGGTGGCGGACATCCTCGAAAGCCTGG
GCATTGTGTCGGGCGGTAAAAGCGATTCTGCCCACAAGAGGTATGCGTTG
GACGACTATTACCCCGCGGAGAAGCGCTCCCCAGCCGTCGGTGGTAGCGT
GTCGATCTACGGGTCTCATGGGGCTTCGAATCTGACGGAGCAACTCAAAC
CTTTAGCCCCTGAATATTGCGAAGAGCTGCCGTGAAGCTCGAAGTCGAAA
GGTACCTGACTCGGCTTGGTA
FMO12511.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:27:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11409-RC | 4397 | CG11409-RC | 285..1305 | 8..1021 | 4675 | 97.8 | Plus |
| CG11409-RB | 4457 | CG11409-RB | 345..1365 | 8..1021 | 4675 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:27:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1332610..1333437 | 1021..201 | 3465 | 96.5 | Minus |
| X | 23542271 | X | 1333503..1333696 | 201..8 | 970 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:27:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 642..710 | 627..696 | 131 | 67.1 | Plus |
FMO12511.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:22 Download gff for
FMO12511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11409-RB | 1..1020 | 8..1020 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:49 Download gff for
FMO12511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11409-RB | 342..1364 | 1..1020 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:04 Download gff for
FMO12511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11409-RB | 342..1364 | 1..1020 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:04 Download gff for
FMO12511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1332611..1333436 | 202..1020 | 97 | <- | Minus |
| X | 1333503..1333699 | 1..201 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:49 Download gff for
FMO12511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1226644..1227469 | 202..1020 | 97 | <- | Minus |
| arm_X | 1227536..1227732 | 1..201 | 98 | | Minus |
