FMO12512.5prime Sequence
1044 bp (921 high quality bases) assembled on 2012-10-30
> FMO12512.5prime
TCGACATGGAGGATGCACAGGAGCAAAGGGAATCCTCGCAAGCCGAATTG
GCCAAAAAGCATCCGCTGACGCCGCTCAAGGAGCTGCCTGAAGAAAGCGA
GGAGGAGGAGGAGGAAGAGGATGAATCCTCGGCGGGAGCCCTACGGGAGT
CTGACAGCAACAACTCCATCATGGGGAAGATGAAGATGCGCGTGTCCAGC
ATTCTGCCCGCCTCCTTGAGCGGTTGGTTTTCGCCGTCGTCCAAAGATGG
GAACGATGCCTTATCCTCCCCAGCTAATCTCCGCCAGTCACAGCCACGCC
AGTCCAATGGACGCCTCACTACCAAGCGGAAACGAGGACGCCGTCGGATA
ATGCTAGCCGAAGTGGATGCCGATGCAGCCGATGATCTTGATGACGGCTC
CGATGCCAAAGGCCTCAACTATGAGGAGGTGGCCCTGGCCGACTACATAG
CCGAACACGACCTGGCCGCCGAGGATGAACAGACGCGGCGGAGCGAGTAC
AATGTGTTCCTGCTGCGCAAGCGAGCCGGGGCTGTTGCAGCTGCCGGCGG
TGACGAGGATGAGGCCGAGGAGGATGAACTGGAAGAGGACGACGAGGATG
GCGATGAGGAGGATGACGATGAAGAGCATGAGAATCTCCAACAGTCCGCC
GCCGTGCAGACCAAGCGTCGACGCCTGGAGCTGGAGACCCCCGTCAATTT
GCCGAACATGCGTCGTCTGCCCCTTTTGTCATCCACGCCTGCTGCTCCGC
TCGCGGCTGCCACCAGCTCCTCCAGCTCCCAGATGTACAAGGGCGTCAGC
CACATTGCGCCACATCGGCGCAATCACCTTAATTTTGTATGGTAGTCAAC
GGCAGCGCGAACCCGCCGTACTACTTTTTCACGGGGCAACGAACTGCCGA
GGGAAGCACCGGGGAATCTGCCACACAGCATCCGGCCGTTCCTTGAACAT
ACCTTTTCGGAGGCAGCAGCACGCCTACCAGCTACAACACAGCCTATTCC
AGGCCTTCTAATCAAAAGCGACTCCGCTCTAAGGCAAGCTAACC
FMO12512.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:27:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup153-RC | 7927 | CG4453-RC | 915..1949 | 6..1044 | 4690 | 97.4 | Plus |
| Nup153-RD | 7981 | CG4453-RD | 831..1865 | 6..1044 | 4690 | 97.4 | Plus |
| Nup153-RA | 7843 | CG4453-RA | 831..1865 | 6..1044 | 4690 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:27:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16600380..16600895 | 165..680 | 2550 | 99.6 | Plus |
| X | 23542271 | X | 16600952..16601198 | 679..928 | 980 | 95.6 | Plus |
| X | 23542271 | X | 16600155..16600313 | 6..164 | 795 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 5950..5999 | 123..73 | 117 | 72.5 | Minus |
FMO12512.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:23 Download gff for
FMO12512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup153-RC | 831..1836 | 1..1014 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:53 Download gff for
FMO12512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup153-RA | 829..1834 | 1..1014 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:11 Download gff for
FMO12512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup153-RA | 829..1834 | 1..1014 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:11 Download gff for
FMO12512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16600153..16600313 | 1..164 | 98 | -> | Plus |
| X | 16600380..16600895 | 165..680 | 99 | -> | Plus |
| X | 16600954..16601198 | 681..928 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:53 Download gff for
FMO12512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16494186..16494346 | 1..164 | 98 | -> | Plus |
| arm_X | 16494413..16494928 | 165..680 | 99 | -> | Plus |
| arm_X | 16494987..16495231 | 681..928 | 97 | -> | Plus |
