FMO12514.5prime Sequence
1114 bp (1007 high quality bases) assembled on 2012-10-30
> FMO12514.5prime
AGTCGACATGGAGGACATTGAATATTTAGACGAGTACAAAGACTTGGTGC
TGCCAGGGATTAAATCGAGTGCTCCGACAGCATCTTCTGCCGGCGTTCCG
CGGCAGCGGCGCATTTCATCAGACTCGAGCAACTCGTCGTCGATTGATGC
GGACATTTTCCAAAAGCTCTTCCATGGCAAGTACCTCGACGACGAACTGC
TTAAGGAGGGCTCTGGCTCGAAGTCGCAGGACAGGCGTCGACGCCCCCCA
TCTCCCTCCTCCAGCGACGAGTCCAACGATGCCTTGGAAGCCCTCTTCTG
CGGGAAGAGCAGCCAGTCAAAGCTGAGCAAGAGGCGCGAACGGTATGAGT
CGTTCGATTCGGTGGACGACCTAGGAGAAGCCCTAATGCGTCCATCGCAC
AGGCTGACCGTACCCAAGCCCAGTACCTCTCAGGCAGGTTCCAAAAAGTC
ACAAGATGCTGCCCCACACAGAAGCATTAGCAATAGCAGCAGCAGCAACA
TTGCCATGTCATCTGGGCAAACTTATGCATGTCCAAAAAACAAGAAAACC
AATTCTGTGGCCAACAAGACAGCAGTATCTGCAAATGGTGATAAATGGGC
TTCCGGCAAAAACAAGACCGTTACCATTGTAAAGCCCCAAAAAACAGATC
TAAGGCCTTCGCGGCTTGAACCCAAAACAGATCCATTAAATTTGGGTGAC
TTATACGGGGACTCTGACAGCGATTCGTCCTATGAGTATGAATCGGACTT
TTACGGCGATCAAGACTCCGATGAAGAGGATGAGCCGGTGATCGACATTT
CAACGGACACAAGCAGGACCACATCGGTGGCGGAAGCTGCCAAACGAAAG
CAACGCCAAGATGTGGAGAAGTCACTACTGGCAAAAGGAACAAGTTAAAC
CAGCTCGACGCCGACACTCGCTGAGGTAGAGACGACCATCCCTTAAACCG
CTCAAGACGGAGTCAGAGCCCAGTCCACTGTCCAGGGCCAAATATATCTC
TATTTATTGCATGAGACTTTCATGTCATCCCACAGCGCCATTAAGGGAAA
CTACAGGAGAGGCCGCAGCACATTCTCCATCTGCAGGAAGTTCGCGGTTA
CGAGAGCAAGGCAG
FMO12514.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)2-HP2-RB | 5417 | CG12864-RB | 253..1342 | 8..1089 | 4905 | 97.7 | Plus |
| Su(var)2-HP2-RA | 10289 | CG12864-RA | 253..1079 | 8..834 | 4135 | 100 | Plus |
| Su(var)2-HP2-RA | 10289 | CG12864-RA | 5950..6214 | 833..1089 | 780 | 90.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14617427..14617748 | 375..54 | 1610 | 100 | Minus |
| 2R | 25286936 | 2R | 14617046..14617363 | 689..372 | 1590 | 100 | Minus |
| 2R | 25286936 | 2R | 14616843..14616986 | 833..690 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 14611620..14611692 | 903..833 | 265 | 97.3 | Minus |
| 2R | 25286936 | 2R | 14617817..14617866 | 57..8 | 250 | 100 | Minus |
| 2R | 25286936 | 2R | 14611354..14611487 | 1030..901 | 245 | 87.4 | Minus |
Blast to na_te.dros performed 2014-11-28 18:29:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6691..6768 | 422..500 | 131 | 64.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1041..1098 | 445..500 | 122 | 72.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1070..1125 | 443..500 | 122 | 72.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6789 | 469..500 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6810 | 469..500 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6786..6843 | 444..500 | 115 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6829..6861 | 468..500 | 111 | 81.8 | Plus |
FMO12514.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:30 Download gff for
FMO12514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-HP2-RB | 172..1281 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:38 Download gff for
FMO12514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-HP2-RB | 245..1354 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:50 Download gff for
FMO12514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-HP2-RB | 245..1354 | 1..1101 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:50 Download gff for
FMO12514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14611620..14611691 | 834..903 | 97 | <- | Minus |
| 2R | 14616843..14616986 | 690..833 | 100 | <- | Minus |
| 2R | 14617046..14617360 | 375..689 | 100 | <- | Minus |
| 2R | 14617428..14617745 | 57..374 | 100 | <- | Minus |
| 2R | 14617818..14617869 | 1..56 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:38 Download gff for
FMO12514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10505323..10505374 | 1..56 | 92 | | Minus |
| arm_2R | 10504933..10505250 | 57..374 | 100 | <- | Minus |
| arm_2R | 10499125..10499196 | 834..903 | 97 | <- | Minus |
| arm_2R | 10504348..10504491 | 690..833 | 100 | <- | Minus |
| arm_2R | 10504551..10504865 | 375..689 | 100 | <- | Minus |
