FMO12515.5prime Sequence
1094 bp (973 high quality bases) assembled on 2012-10-30
> FMO12515.5prime
AGTCGACATGGTCACAATTTGTTCCTTGTCAGCTGCACTAAGTTGTAACA
TTGCTTATAGATTTCCTATCTATGAAATGGAGCATTTAGATCTTGCCGGC
TATCTTGGCCACACGCCTCAAAGTTGGAATACCCTGGGAACCTTTCAGGA
TCAAGATGCTGTTTACCTATCTAGCTCGCGACAAATGTTGGAACCAATTT
TGGAGGAGACTAGCGAGGATGAGGAACGTGCCCGAAGTAGCTTGATTGTA
AGCCTAGATCGCCGCTCCACCCTCTGGAGCTCTACGGAGTCTGAAACTGG
ATCAGTCTTACGCATAGAAACGATTAAGGATATCGATGCTGTTTCTGAGA
GGGACTTTGTCTGCCCACCCAAGCGACCAAGGCGCAGCCATGACTTAAAT
TCTGGCCAGATTTCAGAGGATTGCGTGCAACTTCGCCGCCCTATTCCTTA
CGATCCCGAGTACCACAATAGCTTTGAACGCTTTCTGGCTTTGGAGGCAT
GTGCTCGCGATAGCTTCGGAAGCCAGGGCCAACGCAGCAGTATAGGCAGT
AGGCGAGGGGGCACCTTCGAGGACTTTTATTCGGACAGGGACTCCTCCCA
CTCGCTATCGCGCAGCTCCTCCTTGGTACAGTTCGAGTCCTTGGAACGCC
AGCTCACGCTCCAGGAGCAGCATCAGAGTATGAACAGTCTGGGCAACAGT
TCGCCCTCGCTCACCTGCGAGTCTGGTGCTTCAACGCGGGCCAGGACCAG
GGACAGCAGTCCAGAGAGTAGGAGGGATCAGCCCCGACGCTGTCCCTGCT
AAAGCGTTATGAATCCAGCGACTGTAGTCATCTGCACCAGACATACTATG
AGCTGAACAATCTCAATTTTGAATATAAGCAGCAGCAGGAACTTCTCTCC
AGAAGCCTGCGAGAGGCGGAGCTAAAATCTGACCTAGAGAGCTCCTCTAG
CTCCAGCTCGTCAGCGGATAGCAGTGTCACAGCCTTCTAGCTCTTGCTTG
TCCCGGAGATGCAGTAGCAACCGAAAGGGGTAAAAGACGGACGATTTTCG
TCGAATTCCCTCAATCAGCTGGAAAACTTGTCTGAGGACTTCCG
FMO12515.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42748-RG | 10534 | CG42748-RG | 881..1973 | 8..1090 | 5020 | 98.1 | Plus |
| CG42748-RD | 6732 | CG42748-RD | 493..1585 | 8..1090 | 5020 | 98.1 | Plus |
| CG42748-RC | 6348 | CG42748-RC | 349..1441 | 8..1090 | 5020 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22141833..22142543 | 329..1034 | 3220 | 98.2 | Plus |
| 2L | 23513712 | 2L | 22141593..22141768 | 154..329 | 880 | 100 | Plus |
| 2L | 23513712 | 2L | 22140824..22140971 | 8..155 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:29:21 has no hits.
FMO12515.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:31 Download gff for
FMO12515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42748-RD | 853..1942 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:41 Download gff for
FMO12515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42748-RC | 339..1428 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:54 Download gff for
FMO12515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42748-RC | 339..1428 | 1..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:54 Download gff for
FMO12515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22141595..22141768 | 156..329 | 100 | -> | Plus |
| 2L | 22140814..22140971 | 1..155 | 97 | -> | Plus |
| 2L | 22141834..22142591 | 330..1077 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:41 Download gff for
FMO12515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22141595..22141768 | 156..329 | 100 | -> | Plus |
| arm_2L | 22140814..22140971 | 1..155 | 97 | -> | Plus |
| arm_2L | 22141834..22142591 | 330..1077 | 97 | | Plus |
