FMO12516.5prime Sequence
1108 bp (1013 high quality bases) assembled on 2012-10-30
> FMO12516.5prime
AGTCGACATGCTAGTCGTAAGAGTCCTATGGGCTTTTCTTTGGATCCTTC
CCAAGGCCCTGGGAAAGGACTTCTGTGCGGGGCAATCGTTTGGATCCAGA
GCAGTCGACTCCGAAGATCCCCAATCGTATTACCTCTGCCTTGGTTTTAT
TGGCCCTATAAAAAATACCTGCAAGAATGGATATTTGTTCGATGCTCAAT
CGCAGGGATGTGTGATTATGAACAATGCAACACAATCAATAAAAAAATCA
AATGATCATAAGAAGGAAGTAACCATCAAGCAAAACATCAGCGTGGACAG
ACCCCTTATATTCAACATTTTCGGAAACTTCAATTTCTTCGCCAGTTTGT
GGGGCAACTCTCATGAGACGACACCTTCGCCCTTGAAACCCAACCCAATT
GCCCATTTCCAATTTATAAACAGTGCCGTTGGAATTGAACCTTTGTCGCA
GGATAATCTGGCTGATAAGGATAAGAAGGATATTATATCCAGCTCTTCGG
ATTCATCCCCAACTGAAGATGCAACATATAGTTCGACACAGGTATCCTCC
ACACAAGTGCCGGAAGATGCTTCATCGGCTGAATCTATACAAGAAAGTAC
AACACAAGGAAGTCGTTCAAGCACAGATATTTCTCTGTCTACAGAAGCAT
CCTTAGATGATATAATATTAAGCTCTGAAAGTATCGTGCCTACGGAATCA
TCAACAACCATTATTTCAAGTTCGACGGAAGGTAGTTGGGAAAGTCACAT
TTCCACAGATTCTTCGATAGGATCAAAAGTTGAGTCCTTGTTAATAGAAG
CTTTATATAGTTTGATTCAAGAAAGTAGCTCAAGCTCGGAAAGTCCTGTG
TCCAACGAACCATCTACAGGAGCGACAGATGATTCTTCGTCAACAGATCC
CTACCAGATAGTACCCAAGAAAGTAGCTCAAGCTCAGAAAGCCCTGTTTC
TTTTGATTATTCTACAGAGCGACAATGGAGTCATCATCCTCAGATCTTTA
ACAATAGTCGACTCAGATAGTAGCTCCAGCACTGAACTTCTTCCACAGGA
TCACTACGAATGCACGAATGATCTTCTTCACAGAATTTCACGGATAGTAC
GACAGGAA
FMO12516.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Muc68D-RB | 4802 | CG6004-RB | 17..1128 | 8..1103 | 4970 | 97.4 | Plus |
| Muc68D-RB | 4802 | CG6004-RB | 1017..1147 | 807..933 | 245 | 82 | Plus |
| Muc68D-RB | 4802 | CG6004-RB | 1130..1357 | 818..1036 | 245 | 76.4 | Plus |
| Muc68D-RB | 4802 | CG6004-RB | 1538..1669 | 818..945 | 235 | 79.5 | Plus |
| Muc68D-RB | 4802 | CG6004-RB | 1232..1459 | 818..1036 | 230 | 76 | Plus |
| Muc68D-RB | 4802 | CG6004-RB | 3041..3265 | 818..1036 | 220 | 76 | Plus |
| Muc68D-RB | 4802 | CG6004-RB | 1334..1561 | 818..1036 | 215 | 75.5 | Plus |
| Muc68D-RB | 4802 | CG6004-RB | 1436..1590 | 818..968 | 215 | 76.8 | Plus |
| Muc68D-RB | 4802 | CG6004-RB | 2141..2269 | 818..945 | 210 | 78.8 | Plus |
| Muc68D-RB | 4802 | CG6004-RB | 1640..1864 | 818..1036 | 205 | 75.5 | Plus |
| Muc68D-RB | 4802 | CG6004-RB | 2240..2356 | 818..933 | 195 | 79.2 | Plus |
| Muc68D-RB | 4802 | CG6004-RB | 926..1052 | 818..940 | 195 | 78 | Plus |
| Muc68D-RB | 4802 | CG6004-RB | 2741..2857 | 818..933 | 195 | 79.2 | Plus |
| Muc68D-RB | 4802 | CG6004-RB | 2339..2560 | 818..1036 | 190 | 74.9 | Plus |
| Muc68D-RB | 4802 | CG6004-RB | 2042..2164 | 818..939 | 180 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11771096..11772075 | 994..17 | 4725 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:29:27 has no hits.
FMO12516.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:31 Download gff for
FMO12516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Muc68D-RB | 1..1059 | 6..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:43 Download gff for
FMO12516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Muc68D-RB | 17..1072 | 8..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:59 Download gff for
FMO12516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Muc68D-RB | 17..1072 | 8..1053 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:59 Download gff for
FMO12516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11771029..11772075 | 17..1053 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:43 Download gff for
FMO12516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11764129..11765175 | 17..1053 | 98 | | Minus |
